The 2.0 version of rSNPBase

Variant report

Variant rs57670948
Chromosome Location chr2:181849884-181849885
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:181845000-181850000 Active TSS Fetal Stomach stomach
2 chr2:181846400-181859200 Weak transcription Esophagus oesophagus
3 chr2:181846400-181868600 Weak transcription Gastric stomach
4 chr2:181846600-181852600 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr2:181846600-181872400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr2:181846800-181850000 Enhancers Primary T helper naive cells fromperipheralblood blood
7 chr2:181846800-181851000 Enhancers Brain Substantia Nigra brain
8 chr2:181847000-181850000 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
9 chr2:181847000-181850800 Weak transcription Left Ventricle heart
10 chr2:181847000-181851000 Enhancers Rectal Smooth Muscle rectum
11 chr2:181847000-181855000 Weak transcription Primary T cells fromperipheralblood blood
12 chr2:181847000-181856400 Weak transcription H9 Cell Line embryonic stem cell
13 chr2:181847000-181857600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr2:181847000-181858800 Weak transcription Colonic Mucosa Colon
15 chr2:181847000-181859200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr2:181847000-181862400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr2:181847000-181862800 Weak transcription Placenta Placenta
18 chr2:181847000-181870000 Weak transcription Pancreas Pancrea
19 chr2:181847000-181873200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:181847200-181850400 Weak transcription Stomach Mucosa stomach
21 chr2:181847200-181851400 Enhancers Colon Smooth Muscle Colon
22 chr2:181847200-181858800 Weak transcription Primary neutrophils fromperipheralblood blood
23 chr2:181847400-181850000 Enhancers Rectal Mucosa Donor 31 rectum
24 chr2:181847400-181870000 Weak transcription Right Ventricle heart
25 chr2:181847600-181864200 Weak transcription Primary T regulatory cells fromperipheralblood blood
26 chr2:181847600-181868400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr2:181847800-181850000 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr2:181847800-181850600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr2:181847800-181854400 Weak transcription Primary monocytes fromperipheralblood blood
30 chr2:181848200-181850400 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr2:181848400-181850400 Active TSS GM12878-XiMat blood
32 chr2:181848400-181851200 Enhancers Brain Cingulate Gyrus brain
33 chr2:181848600-181850200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
34 chr2:181848800-181850000 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr2:181848800-181850000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
36 chr2:181848800-181850000 Transcr. at gene 5' and 3' Dnd41 blood
37 chr2:181848800-181850000 Transcr. at gene 5' and 3' NHDF-Ad bronchial
38 chr2:181848800-181850600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
39 chr2:181848800-181850600 Weak transcription Fetal Thymus thymus
40 chr2:181848800-181850600 Weak transcription HSMMtube muscle
41 chr2:181848800-181850800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr2:181848800-181851200 Enhancers Skeletal Muscle Male skeletal muscle
43 chr2:181848800-181856200 Weak transcription Psoas Muscle Psoas
44 chr2:181848800-181856400 Weak transcription Ovary ovary
45 chr2:181849000-181850000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr2:181849000-181850000 Enhancers Brain Anterior Caudate brain
47 chr2:181849000-181850000 Enhancers Pancreatic Islets Pancreatic Islet
48 chr2:181849000-181850000 Genic enhancers HSMM muscle
49 chr2:181849000-181850400 Weak transcription A549 lung
50 chr2:181849000-181850600 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015