Variant report

Variant	rs57672167
Chromosome Location	chr1:152278689-152278690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10788831	0.81[EUR][1000 genomes]
rs10888478	0.82[EUR][1000 genomes]
rs11204976	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11204978	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11204980	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11204981	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11485508	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11576858	0.90[EUR][1000 genomes]
rs11584340	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12027807	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12027899	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12045492	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12045496	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12065368	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12405241	0.80[AMR][1000 genomes]
rs12405278	0.80[AMR][1000 genomes]
rs12407553	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12407807	0.80[AMR][1000 genomes]
rs12409802	0.82[EUR][1000 genomes]
rs12730241	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1858479	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1858480	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1858482	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2065955	0.87[AMR][1000 genomes]
rs2065956	0.80[AMR][1000 genomes]
rs2184950	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2184951	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2184953	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2184954	0.82[AMR][1000 genomes]
rs2338555	0.87[AMR][1000 genomes]
rs2338556	0.87[AMR][1000 genomes]
rs3091276	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3120642	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3120653	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3120659	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3120661	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3120662	0.90[AMR][1000 genomes]
rs3126054	0.84[EUR][1000 genomes]
rs3126055	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3126056	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3126058	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3126060	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3126062	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3126066	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3126067	0.83[AMR][1000 genomes]
rs3126072	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3126074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3126079	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3126085	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3126088	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3126089	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3126091	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3126092	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3126094	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3126095	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3126097	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3126098	0.85[AMR][1000 genomes]
rs34029395	0.82[AMR][1000 genomes]
rs34188926	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41267154	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4256811	0.82[EUR][1000 genomes]
rs4341364	0.82[EUR][1000 genomes]
rs55650366	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6587666	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6681433	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6681457	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66831674	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71625201	0.95[EUR][1000 genomes]
rs71625202	0.90[EUR][1000 genomes]
rs72697000	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74129461	0.96[EUR][1000 genomes]
rs7540844	0.82[EUR][1000 genomes]
rs7543541	0.82[EUR][1000 genomes]
rs9435974	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9436062	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv18892	chr1:152274215-152287539	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3322880	chr1:152274354-152281047	Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv471348	chr1:152274651-152297679	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1810816	chr1:152274993-152286236	Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1827528	chr1:152274993-152286236	Strong transcription ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1812211	chr1:152275193-152286036	Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1826389	chr1:152275193-152286036	ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3523401	chr1:152276028-152280426	Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
12	esv3523402	chr1:152276028-152280426	Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3354621	chr1:152276028-152280726	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3395707	chr1:152276067-152282031	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	esv20418	chr1:152277700-152279580	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv821364	chr1:152277700-152279580	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3383471	chr1:152278075-152278798	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3394559	chr1:152278490-152278770	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1330223	chr1:152278661-152279633	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152274000-152283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152274200-152279600	Weak transcription	Fetal Lung	lung
3	chr1:152274200-152281400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:152276000-152279600	Weak transcription	Pancreas	Pancrea
5	chr1:152276000-152279800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:152276600-152280400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:152277000-152279600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:152277600-152279600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:152277600-152280600	Weak transcription	Esophagus	oesophagus
10	chr1:152277600-152282400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:152277600-152283600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:152278200-152288000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links