Variant report

Variant	rs57673817
Chromosome Location	chr7:101853069-101853070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101850594..101853463-chr7:101853690..101855525,2	K562	blood:
2	chr7:101845767..101848197-chr7:101852557..101854505,2	MCF-7	breast:
3	chr7:101851963..101853929-chr7:101854025..101857079,3	K562	blood:
4	chr7:101848603..101850425-chr7:101852755..101855583,2	MCF-7	breast:
5	chr7:101845856..101848223-chr7:101850604..101853767,3	K562	blood:
6	chr7:101845069..101847356-chr7:101851409..101853446,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10263474	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs104933	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972888	0.88[EUR][1000 genomes]
rs11982785	0.83[EUR][1000 genomes]
rs17135076	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734614	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529097	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34746794	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364466	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380967	0.88[EUR][1000 genomes]
rs388592	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389224	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392286	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs397479	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411030	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424941	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436090	0.88[EUR][1000 genomes]
rs442030	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446513	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59476027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408093	0.86[EUR][1000 genomes]
rs73408094	0.88[EUR][1000 genomes]
rs73412026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412034	1.00[EUR][1000 genomes]
rs73412036	0.98[EUR][1000 genomes]
rs73412046	0.86[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
4	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
10	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
11	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:101821200-101857200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:101823400-101853800	Weak transcription	Fetal Kidney	kidney
15	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
17	chr7:101831600-101855800	Strong transcription	Left Ventricle	heart
18	chr7:101832200-101858200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:101832200-101859200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:101832200-101859400	Strong transcription	Fetal Thymus	thymus
21	chr7:101832200-101863200	Strong transcription	Dnd41	blood
22	chr7:101832400-101853800	Strong transcription	Fetal Muscle Leg	muscle
23	chr7:101832400-101856600	Strong transcription	Stomach Smooth Muscle	stomach
24	chr7:101832400-101864000	Strong transcription	Fetal Stomach	stomach
25	chr7:101832600-101857800	Weak transcription	Fetal Heart	heart
26	chr7:101832600-101860200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr7:101832800-101864800	Strong transcription	Primary T cells from cord blood	blood
28	chr7:101834600-101860200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:101837400-101861600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:101838800-101854400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:101840600-101863800	Weak transcription	NH-A	brain
33	chr7:101841200-101863800	Weak transcription	HSMM	muscle
34	chr7:101842200-101855600	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr7:101846000-101857800	Weak transcription	Psoas Muscle	Psoas
36	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
37	chr7:101847000-101877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:101847800-101856000	Strong transcription	Adipose Nuclei	Adipose
39	chr7:101848800-101872000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:101849000-101863600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:101849200-101853800	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:101849200-101853800	Weak transcription	Brain Substantia Nigra	brain
43	chr7:101849200-101864400	Weak transcription	NHLF	lung
44	chr7:101849200-101870400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr7:101849400-101853800	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:101849400-101853800	Weak transcription	K562	blood
47	chr7:101849400-101857800	Weak transcription	Fetal Brain Female	brain
48	chr7:101849400-101870600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:101849600-101853800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:101849600-101853800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links