Variant report

Variant	rs57685859
Chromosome Location	chr6:133121638-133121639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000079950	Chromatin interaction
ENSG00000221500	Chromatin interaction
ENSG00000206754	Chromatin interaction
ENSG00000200534	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57060973	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59357932	1.00[EUR][1000 genomes]
rs59646391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60931106	1.00[AMR][1000 genomes]
rs61228504	1.00[AMR][1000 genomes]
rs73554439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558375	1.00[EUR][1000 genomes]
rs73558378	1.00[EUR][1000 genomes]
rs73558387	1.00[EUR][1000 genomes]
rs7748090	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133120400-133126200	Weak transcription	Fetal Heart	heart
2	chr6:133120800-133134000	Weak transcription	Pancreas	Pancrea
3	chr6:133121200-133122400	Weak transcription	K562	blood
4	chr6:133121200-133128000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:133121200-133129000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:133121200-133133600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:133121400-133122400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:133121600-133122800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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