Variant report

Variant	rs57699120
Chromosome Location	chr15:34464618-34464619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34464003..34466494-chr15:34466732..34469495,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10851950	0.81[ASN][1000 genomes]
rs11852537	0.84[ASN][1000 genomes]
rs11857684	0.84[ASN][1000 genomes]
rs12592460	0.82[ASN][1000 genomes]
rs16958835	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958836	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958848	0.84[ASN][1000 genomes]
rs1836978	0.80[ASN][1000 genomes]
rs2339368	0.83[ASN][1000 genomes]
rs28375867	0.84[ASN][1000 genomes]
rs28418847	0.84[ASN][1000 genomes]
rs28538047	0.84[ASN][1000 genomes]
rs28813796	0.84[ASN][1000 genomes]
rs34187931	0.84[ASN][1000 genomes]
rs4780226	0.81[ASN][1000 genomes]
rs56936283	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57530092	0.85[ASN][1000 genomes]
rs57715967	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57834992	0.84[ASN][1000 genomes]
rs59611916	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59635553	0.85[ASN][1000 genomes]
rs60749797	0.84[ASN][1000 genomes]
rs60905714	0.84[ASN][1000 genomes]
rs6495558	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495580	0.85[ASN][1000 genomes]
rs7166360	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172480	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7172633	0.85[ASN][1000 genomes]
rs7173244	0.84[ASN][1000 genomes]
rs7173618	0.84[ASN][1000 genomes]
rs7174442	0.85[ASN][1000 genomes]
rs7174586	0.84[ASN][1000 genomes]
rs7175168	0.83[ASN][1000 genomes]
rs7178002	0.84[ASN][1000 genomes]
rs7178203	0.85[ASN][1000 genomes]
rs7180024	0.84[ASN][1000 genomes]
rs7180920	0.82[ASN][1000 genomes]
rs73376156	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73376168	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73376178	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73376181	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73376192	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73376193	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73376196	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73378126	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73378128	0.85[ASN][1000 genomes]
rs73378138	0.85[ASN][1000 genomes]
rs73378141	0.83[ASN][1000 genomes]
rs73378144	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73380107	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73380126	0.84[ASN][1000 genomes]
rs73380135	0.84[ASN][1000 genomes]
rs73380141	0.84[ASN][1000 genomes]
rs73380157	0.84[ASN][1000 genomes]
rs7497840	0.83[ASN][1000 genomes]
rs7497951	0.84[ASN][1000 genomes]
rs8025406	0.81[ASN][1000 genomes]
rs8025730	0.82[ASN][1000 genomes]
rs8028932	0.85[ASN][1000 genomes]
rs8028950	0.85[ASN][1000 genomes]
rs8031102	0.82[ASN][1000 genomes]
rs8036791	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040732	0.82[ASN][1000 genomes]
rs9920654	0.81[ASN][1000 genomes]
rs9944206	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57699120	NOP10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:34454000-34477400	Weak transcription	HSMM	muscle
3	chr15:34454200-34497800	Weak transcription	Osteobl	bone
4	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
5	chr15:34454800-34465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:34458800-34466800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:34459600-34464800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:34464000-34465000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:34464000-34465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:34464400-34464800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:34464400-34465600	ZNF genes & repeats	Dnd41	blood
14	chr15:34464600-34464800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:34464600-34465000	ZNF genes & repeats	Thymus	Thymus
16	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix

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