Variant report

Variant	rs577037161
Chromosome Location	chr11:46938832-46938833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46933810..46936759-chr11:46937673..46939969,2	MCF-7	breast:
2	chr11:46936734..46939030-chr11:46940693..46942577,2	K562	blood:
3	chr11:46938691..46940925-chr17:56734920..56736797,2	MCF-7	breast:
4	chr11:46933026..46934959-chr11:46937593..46939848,2	K562	blood:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3354576	chr11:46938801-46941349	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46933600-46939000	Enhancers	Spleen	Spleen
2	chr11:46934400-46939000	Weak transcription	Hela-S3	cervix
3	chr11:46937600-46939000	Active TSS	Brain Hippocampus Middle	brain
4	chr11:46937600-46939800	Active TSS	Fetal Kidney	kidney
5	chr11:46937800-46939000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:46937800-46939200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:46937800-46939400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr11:46937800-46939400	Flanking Active TSS	HMEC	breast
9	chr11:46937800-46939800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:46937800-46940400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr11:46937800-46940400	Active TSS	Brain Anterior Caudate	brain
12	chr11:46937800-46940400	Active TSS	Brain Cingulate Gyrus	brain
13	chr11:46937800-46940400	Active TSS	HSMMtube	muscle
14	chr11:46938000-46939200	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr11:46938000-46939200	Flanking Active TSS	Rectal Smooth Muscle	rectum
16	chr11:46938000-46939200	Active TSS	Right Atrium	heart
17	chr11:46938000-46939400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
18	chr11:46938000-46939400	Flanking Active TSS	NHEK	skin
19	chr11:46938000-46939600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:46938000-46939600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:46938000-46939600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr11:46938000-46939600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:46938000-46939600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
24	chr11:46938000-46939600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
25	chr11:46938000-46939600	Flanking Active TSS	Placenta	Placenta
26	chr11:46938000-46939600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr11:46938000-46939600	Flanking Active TSS	Osteobl	bone
28	chr11:46938000-46939800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
29	chr11:46938000-46940400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:46938000-46940600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:46938000-46940600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:46938000-46940600	Active TSS	Ovary	ovary
33	chr11:46938000-46940600	Flanking Bivalent TSS/Enh	Thymus	Thymus
34	chr11:46938000-46940800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:46938000-46940800	Active TSS	H9 Cell Line	embryonic stem cell
36	chr11:46938000-46941200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:46938200-46939000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:46938200-46939000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:46938200-46939000	Active TSS	Fetal Stomach	stomach
40	chr11:46938200-46939000	Active TSS	Psoas Muscle	Psoas
41	chr11:46938200-46939200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:46938200-46939200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
43	chr11:46938200-46939200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
44	chr11:46938200-46939400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
45	chr11:46938200-46939400	Flanking Active TSS	Liver	Liver
46	chr11:46938200-46939600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
47	chr11:46938200-46939600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
48	chr11:46938200-46939600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:46938200-46939600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
50	chr11:46938200-46939600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--

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