Variant report

Variant	rs57713628
Chromosome Location	chr15:40116381-40116382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10162972	0.91[EUR][1000 genomes]
rs275715	0.84[EUR][1000 genomes]
rs28367262	0.91[EUR][1000 genomes]
rs56324718	0.82[EUR][1000 genomes]
rs58367323	1.00[AMR][1000 genomes]
rs73399187	0.91[EUR][1000 genomes]
rs73399194	0.91[EUR][1000 genomes]
rs73399195	0.91[EUR][1000 genomes]
rs73401105	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40094400-40120400	Weak transcription	HSMMtube	muscle
2	chr15:40096200-40120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:40099400-40116600	Weak transcription	HSMM	muscle
4	chr15:40103000-40121400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:40104000-40116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:40110400-40129800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:40111600-40123400	Weak transcription	Aorta	Aorta
8	chr15:40112600-40120600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:40112600-40121400	Weak transcription	Right Atrium	heart
10	chr15:40112800-40120000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:40112800-40120200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:40112800-40120400	Weak transcription	Osteobl	bone
13	chr15:40114200-40118000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:40114400-40120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:40114400-40121400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:40115600-40116400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:40115600-40119200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:40115800-40120400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:40116000-40116400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:40116000-40117000	ZNF genes & repeats	NHLF	lung
21	chr15:40116000-40122600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:40116200-40116600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:40116200-40116800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:40116200-40117000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr15:40116200-40118000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:40116200-40122600	Weak transcription	H1 Cell Line	embryonic stem cell

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