Variant report

Variant	rs577238020
Chromosome Location	chr6:150463481-150463482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:150463462-150463750	IMR90	lung:	n/a	n/a
2	FOS	chr6:150463463-150463701	MCF10A-Er-Src	breast:	n/a	n/a
3	FOXP2	chr6:150463430-150463819	SK-N-MC	brain:	n/a	n/a
4	PAX5	chr6:150463351-150463575	GM12878	blood:	n/a	n/a
5	MAX	chr6:150463421-150464547	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
6	POLR2A	chr6:150463420-150464752	MCF10A-Er-Src	breast:	n/a	n/a
7	TEAD4	chr6:150463398-150464420	ECC-1	luminal epithelium:	n/a	chr6:150463668-150463677
8	STAT3	chr6:150463470-150463728	MCF10A-Er-Src	breast:	n/a	chr6:150463598-150463606 chr6:150463565-150463572
9	SPI1	chr6:150463429-150463829	HL-60	blood:	n/a	chr6:150463636-150463649 chr6:150463639-150463646
10	MAX	chr6:150463401-150465404	HCT-116	colon:	n/a	chr6:150463947-150463956
11	PAX5	chr6:150463328-150463599	GM12878	blood:	n/a	n/a
12	MYC	chr6:150463397-150463728	MCF10A-Er-Src	breast:	n/a	n/a
13	MAX	chr6:150463355-150464742	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
14	FOS	chr6:150463430-150463750	MCF10A-Er-Src	breast:	n/a	n/a
15	MYC	chr6:150463472-150464426	MCF10A-Er-Src	breast:	n/a	chr6:150463947-150463956
16	KAP1	chr6:150463034-150463533	HEK293	kidney:	n/a	chr6:150463357-150463365
17	SPI1	chr6:150463425-150463881	HL-60	blood:	n/a	chr6:150463636-150463649 chr6:150463639-150463646
18	ZNF263	chr6:150463467-150465482	K562	blood:	n/a	chr6:150464144-150464153
19	STAT3	chr6:150463462-150463662	MCF10A-Er-Src	breast:	n/a	chr6:150463598-150463606 chr6:150463565-150463572
20	FOS	chr6:150463427-150463774	MCF10A-Er-Src	breast:	n/a	n/a
21	ZNF263	chr6:150463239-150466129	HEK293-T-REx	kidney:	n/a	chr6:150464144-150464153
22	ZBTB7A	chr6:150463445-150465267	ECC-1	luminal epithelium:	n/a	chr6:150464861-150464869

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150462370..150464017-chr6:150474588..150477355,2	K562	blood:

Variant related genes	Relation type
PPP1R14C	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3365555	chr6:150463284-150466132	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150462200-150463600	Weak transcription	Right Atrium	heart
2	chr6:150463000-150463600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:150463000-150463600	Bivalent Enhancer	Colonic Mucosa	Colon
4	chr6:150463000-150463600	Bivalent Enhancer	Fetal Thymus	thymus
5	chr6:150463000-150463800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150463000-150463800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
7	chr6:150463000-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr6:150463200-150463600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:150463200-150463600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:150463200-150463600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:150463200-150463600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:150463200-150463600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
18	chr6:150463200-150463600	Flanking Active TSS	Brain Anterior Caudate	brain
19	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
20	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
21	chr6:150463200-150463600	Flanking Active TSS	Fetal Brain Male	brain
22	chr6:150463200-150463600	Flanking Active TSS	Fetal Heart	heart
23	chr6:150463200-150463600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
25	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
26	chr6:150463200-150463600	Flanking Active TSS	NHEK	skin
27	chr6:150463200-150463800	Enhancers	Pancreas	Pancrea
28	chr6:150463200-150463800	Flanking Bivalent TSS/Enh	NH-A	brain
29	chr6:150463200-150464000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr6:150463200-150464000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
31	chr6:150463200-150464000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
32	chr6:150463200-150464000	Flanking Active TSS	HMEC	breast
33	chr6:150463200-150464200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:150463200-150464200	Flanking Bivalent TSS/Enh	Placenta	Placenta
35	chr6:150463200-150464600	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr6:150463200-150464800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr6:150463200-150464800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
39	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:150463200-150465000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:150463200-150465000	Bivalent/Poised TSS	A549	lung
42	chr6:150463200-150465200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
43	chr6:150463200-150465200	Bivalent Enhancer	Spleen	Spleen
44	chr6:150463200-150465400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr6:150463200-150465400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
46	chr6:150463200-150465600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:150463200-150466600	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr6:150463400-150463600	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
49	chr6:150463400-150463600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
50	chr6:150463400-150463600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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