Variant report

Variant	rs57729298
Chromosome Location	chr18:29282541-29282542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60662419	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9950895	0.84[AFR][1000 genomes]
rs9958392	0.84[AFR][1000 genomes]
rs9961608	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv962961	chr18:29279956-29286911	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29267200-29282600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:29281000-29283000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr18:29281200-29282800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr18:29281400-29282600	Weak transcription	Aorta	Aorta
5	chr18:29281400-29290400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr18:29282200-29282600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr18:29282200-29283800	Enhancers	K562	blood
8	chr18:29282200-29284000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:29282400-29282800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr18:29282400-29284000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr18:29282400-29284000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr18:29282400-29284000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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