Variant report

Variant	rs57731027
Chromosome Location	chr5:151539289-151539290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10223081	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13353990	0.80[AMR][1000 genomes]
rs17742580	0.94[ASN][1000 genomes]
rs6874463	0.84[ASN][1000 genomes]
rs7729873	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883045	chr5:151514171-151540888	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv883046	chr5:151514956-151540888	Bivalent Enhancer Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv516251	chr5:151514956-151543128	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv883047	chr5:151516086-151540888	Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151538800-151540400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:151538800-151540600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr5:151538800-151540800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:151538800-151540800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:151538800-151541000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:151538800-151541200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:151538800-151541200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:151539000-151539400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr5:151539000-151540600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:151539000-151540800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:151539200-151539800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:151539200-151540000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:151539200-151540200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:151539200-151540200	Enhancers	Stomach Mucosa	stomach
15	chr5:151539200-151540800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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