Variant report

Variant	rs577486097
Chromosome Location	chr15:76627843-76627844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:31)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:31 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76627501-76628913	H1-neurons	neurons:	n/a	n/a
2	MAX	chr15:76627487-76627902	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr15:76627410-76627910	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr15:76627540-76629356	GM12892	blood:	n/a	n/a
5	MXI1	chr15:76627471-76631959	SK-N-SH	brain:	n/a	n/a
6	SIN3A	chr15:76627629-76628045	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr15:76627208-76629206	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr15:76627805-76629391	HepG2	liver:	n/a	n/a
9	TBP	chr15:76627480-76627868	H1-hESC	embryonic stem cell:	n/a	n/a
10	YY1	chr15:76627614-76628365	H1-hESC	embryonic stem cell:	n/a	chr15:76628209-76628218 chr15:76627668-76627682
11	POLR2A	chr15:76627629-76629370	GM18951	blood:	n/a	n/a
12	POLR2A	chr15:76627843-76629314	GM12878	blood:	n/a	n/a
13	MAX	chr15:76627480-76627956	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr15:76627595-76627869	GM12878	blood:	n/a	n/a
15	TAF1	chr15:76627384-76627917	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr15:76627788-76629367	GM12891	blood:	n/a	n/a
17	MAZ	chr15:76627669-76627921	GM12878	blood:	n/a	n/a
18	CTBP2	chr15:76627475-76627861	H1-hESC	embryonic stem cell:	n/a	n/a
19	HMGN3	chr15:76627562-76627847	K562	blood:	n/a	n/a
20	POLR2A	chr15:76627633-76629333	GM18505	blood:	n/a	n/a
21	POLR2A	chr15:76627564-76629360	GM19193	blood:	n/a	n/a
22	E2F6	chr15:76627319-76628127	H1-hESC	embryonic stem cell:	n/a	n/a
23	ARID3A	chr15:76627805-76627995	HepG2	liver:	n/a	n/a
24	YY1	chr15:76627470-76627886	H1-hESC	embryonic stem cell:	n/a	chr15:76627668-76627682
25	HCFC1	chr15:76627381-76629883	Hela-S3	cervix:	n/a	n/a
26	TCF12	chr15:76627556-76627899	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr15:76627521-76627868	H1-hESC	embryonic stem cell:	n/a	n/a
28	MAX	chr15:76627408-76628064	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr15:76627825-76627844	HepG2	liver:	n/a	n/a
30	MTA3	chr15:76627505-76629337	GM12878	blood:	n/a	n/a
31	POLR2A	chr15:76627399-76631373	H1-neurons	neurons:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76591467..76593414-chr15:76626364..76628156,2	K562	blood:
3	chr15:76598820..76601362-chr15:76625646..76628540,2	K562	blood:
4	chr15:76537469..76539301-chr15:76627220..76628943,2	MCF-7	breast:
5	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
6	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
7	chr15:76597896..76600825-chr15:76626656..76628546,2	MCF-7	breast:
8	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
9	chr15:76591467..76593995-chr15:76626637..76628156,2	K562	blood:
10	chr15:76488844..76490782-chr15:76625306..76628294,2	K562	blood:
11	chr15:76583048..76585196-chr15:76627041..76629277,2	MCF-7	breast:

No data

Variant related genes	Relation type
ISL2	TF binding region
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76621000-76628000	Weak transcription	HSMMtube	muscle
2	chr15:76627000-76629000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr15:76627400-76628000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:76627400-76628000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr15:76627400-76628000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr15:76627400-76628000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:76627400-76628000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr15:76627400-76628000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr15:76627400-76628000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:76627400-76628400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr15:76627400-76628400	Bivalent Enhancer	Esophagus	oesophagus
12	chr15:76627400-76628600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
13	chr15:76627400-76629000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr15:76627400-76629000	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr15:76627400-76629400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr15:76627400-76629400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr15:76627400-76629600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr15:76627600-76628000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:76627600-76628000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
21	chr15:76627600-76628000	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:76627600-76628000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr15:76627600-76628000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:76627600-76628000	Bivalent Enhancer	Adipose Nuclei	Adipose
25	chr15:76627600-76628000	Bivalent Enhancer	Brain Substantia Nigra	brain
26	chr15:76627600-76628000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
27	chr15:76627600-76628000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
28	chr15:76627600-76628000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr15:76627600-76628000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
30	chr15:76627600-76628000	Flanking Active TSS	GM12878-XiMat	blood
31	chr15:76627600-76628200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:76627600-76628200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
33	chr15:76627600-76628200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:76627600-76628200	Flanking Active TSS	HepG2	liver
35	chr15:76627600-76628200	Enhancers	HSMM	muscle
36	chr15:76627600-76628400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
37	chr15:76627600-76628400	Bivalent Enhancer	Fetal Thymus	thymus
38	chr15:76627600-76628600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:76627600-76628600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:76627600-76628600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
41	chr15:76627600-76628600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:76627600-76628600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:76627600-76628600	Genic enhancers	Right Atrium	heart
44	chr15:76627600-76628600	Flanking Active TSS	Hela-S3	cervix
45	chr15:76627600-76628800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:76627600-76628800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
47	chr15:76627600-76628800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:76627600-76628800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:76627600-76628800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
50	chr15:76627600-76628800	Flanking Bivalent TSS/Enh	Placenta	Placenta

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