Variant report

Variant	rs577496962
Chromosome Location	chr8:10530492-10530493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:10529926-10530501	HUVEC	blood vessel:	n/a	chr8:10530127-10530138 chr8:10530130-10530140 chr8:10530130-10530140 chr8:10530130-10530140

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10528112..10530692-chr8:10696880..10699073,2	K562	blood:

Variant related genes	Relation type
C8orf74	TF binding region
ENSG00000253695	Chromatin interaction
ENSG00000254093	Chromatin interaction
ENSG00000258724	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1021048	chr8:10504395-10591896	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
8	nsv515898	chr8:10530037-10557407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv527184	chr8:10530037-10589913	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10526800-10537600	Weak transcription	Gastric	stomach
2	chr8:10528600-10531000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:10529000-10530600	Enhancers	Spleen	Spleen
4	chr8:10529000-10531000	Enhancers	HUVEC	blood vessel
5	chr8:10529200-10530600	Enhancers	Esophagus	oesophagus
6	chr8:10529200-10530600	Enhancers	HMEC	breast
7	chr8:10529400-10530800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:10529400-10530800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:10529600-10530600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:10529600-10530600	Enhancers	Brain Anterior Caudate	brain
11	chr8:10529600-10530800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:10529600-10530800	Enhancers	Lung	lung
13	chr8:10529600-10532800	Weak transcription	K562	blood
14	chr8:10529800-10530600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:10529800-10531000	Enhancers	Hela-S3	cervix
16	chr8:10530000-10530600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr8:10530000-10530600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:10530000-10530800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:10530000-10532600	Weak transcription	A549	lung
20	chr8:10530200-10530600	Enhancers	NH-A	brain
21	chr8:10530200-10530800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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