Variant report

Variant	rs57760617
Chromosome Location	chr9:16829981-16829982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60191165	1.00[AMR][1000 genomes]
rs7047761	1.00[AMR][1000 genomes]
rs73646206	1.00[AMR][1000 genomes]
rs73649044	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73649048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16828200-16831000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16828400-16830800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:16828400-16831000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:16829200-16831200	Enhancers	NHDF-Ad	bronchial
5	chr9:16829200-16832800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:16829200-16852800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:16829400-16830000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr9:16829400-16830200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:16829400-16830200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:16829400-16830200	Enhancers	Fetal Lung	lung
11	chr9:16829400-16830200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:16829400-16830400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:16829400-16830400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:16829400-16830400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr9:16829400-16830600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:16829400-16830800	Weak transcription	HSMMtube	muscle
17	chr9:16829400-16831000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:16829400-16831000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:16829400-16831000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:16829400-16831000	Enhancers	Fetal Muscle Leg	muscle
21	chr9:16829400-16831200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:16829400-16831200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:16829400-16831200	Enhancers	Fetal Stomach	stomach
24	chr9:16829400-16831400	Enhancers	Colon Smooth Muscle	Colon
25	chr9:16829400-16831400	Enhancers	Osteobl	bone
26	chr9:16829400-16833200	Weak transcription	NHLF	lung
27	chr9:16829400-16833400	Weak transcription	Ovary	ovary
28	chr9:16829400-16836400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:16829400-16839800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:16829600-16830000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr9:16829600-16830000	Weak transcription	HSMM	muscle
32	chr9:16829600-16830600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr9:16829600-16831400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr9:16829600-16832200	Weak transcription	Fetal Intestine Small	intestine
35	chr9:16829600-16832400	Weak transcription	Fetal Intestine Large	intestine
36	chr9:16829800-16830800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:16829800-16830800	Weak transcription	Adipose Nuclei	Adipose
38	chr9:16829800-16835600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:16829800-16864200	Weak transcription	NH-A	brain

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