Variant report

Variant	rs57762550
Chromosome Location	chr1:225082852-225082853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:225082780-225082930	GM12878	blood:	n/a	chr1:225082848-225082866
2	CTCF	chr1:225082800-225082950	BE2_C	brain:	n/a	chr1:225082848-225082866
3	CTCF	chr1:225082820-225082970	HEEpiC	esophagus:	n/a	chr1:225082848-225082866
4	RAD21	chr1:225082660-225083001	HepG2	liver:	n/a	n/a
5	YY1	chr1:225082634-225082867	A549	lung:	n/a	chr1:225082762-225082774 chr1:225082737-225082749 chr1:225082738-225082760
6	GATA3	chr1:225082551-225083058	SK-N-SH	brain:	n/a	chr1:225082899-225082908
7	CTCF	chr1:225082760-225082910	HMEC	breast:	n/a	chr1:225082848-225082866
8	CTCF	chr1:225082632-225083079	HCT-116	colon:	n/a	chr1:225082848-225082866
9	HDAC2	chr1:225082624-225083039	MCF-7	breast:	n/a	chr1:225082873-225082887 chr1:225082878-225082892 chr1:225082877-225082891
10	CTCF	chr1:225082800-225082950	GM12875	blood:	n/a	chr1:225082848-225082866
11	CTCF	chr1:225082760-225082929	MCF-7	breast:	n/a	chr1:225082848-225082866
12	RAD21	chr1:225082617-225082983	HepG2	liver:	n/a	n/a
13	CTCF	chr1:225082720-225082870	GM12878	blood:	n/a	chr1:225082848-225082866
14	CTCF	chr1:225082740-225082890	HPF	lung:	n/a	chr1:225082848-225082866
15	RAD21	chr1:225082723-225082922	GM12878	blood:	n/a	n/a
16	YY1	chr1:225082505-225082963	H1-hESC	embryonic stem cell:	n/a	chr1:225082762-225082774 chr1:225082737-225082749 chr1:225082738-225082760
17	RAD21	chr1:225082662-225082951	A549	lung:	n/a	n/a
18	YY1	chr1:225082622-225082976	SK-N-SH_RA	brain:	n/a	chr1:225082762-225082774 chr1:225082737-225082749 chr1:225082738-225082760
19	CTCF	chr1:225082800-225082950	GM12864	blood:	n/a	chr1:225082848-225082866
20	CTCF	chr1:225082760-225082910	AG10803	skin:	n/a	chr1:225082848-225082866
21	CTCF	chr1:225082800-225082950	AG09319	gingival:	n/a	chr1:225082848-225082866
22	CTCF	chr1:225082816-225082913	GM13977	blood:	n/a	chr1:225082848-225082866
23	CTCF	chr1:225082666-225082990	A549	lung:	n/a	chr1:225082848-225082866
24	CTCF	chr1:225082757-225082946	HepG2	liver:	n/a	chr1:225082848-225082866
25	CTCF	chr1:225082780-225082930	HMF	breast:	n/a	chr1:225082848-225082866
26	CTCF	chr1:225082722-225082959	HepG2	liver:	n/a	chr1:225082848-225082866
27	RAD21	chr1:225082578-225083091	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr1:225082820-225082970	Hela-S3	cervix:	n/a	chr1:225082848-225082866
29	GATA3	chr1:225082674-225083081	MCF-7	breast:	n/a	chr1:225082899-225082908
30	CTCF	chr1:225082760-225082910	NB4	blood:	n/a	chr1:225082848-225082866
31	CTCF	chr1:225082740-225082890	A549	lung:	n/a	chr1:225082848-225082866
32	CTCF	chr1:225082820-225082970	SK-N-SH_RA	brain:	n/a	chr1:225082848-225082866
33	YY1	chr1:225082477-225082988	H1-hESC	embryonic stem cell:	n/a	chr1:225082762-225082774 chr1:225082737-225082749 chr1:225082738-225082760
34	GATA3	chr1:225082777-225082960	SH-SY5Y	brain:	n/a	chr1:225082899-225082908
35	CTCF	chr1:225082694-225083012	K562	blood:	n/a	chr1:225082848-225082866
36	CTCF	chr1:225082780-225082930	AG09309	skin:	n/a	chr1:225082848-225082866
37	CTCF	chr1:225082723-225082967	Gliobla	brain:	n/a	chr1:225082848-225082866
38	GATA3	chr1:225082640-225083067	MCF-7	breast:	n/a	chr1:225082899-225082908
39	CTCF	chr1:225082760-225082910	SK-N-SH_RA	brain:	n/a	chr1:225082848-225082866
40	RAD21	chr1:225082609-225083032	H1-hESC	embryonic stem cell:	n/a	n/a
41	CTCF	chr1:225082732-225082955	Hela-S3	cervix:	n/a	chr1:225082848-225082866
42	RAD21	chr1:225082590-225083041	MCF-7	breast:	n/a	n/a
43	CTCF	chr1:225082720-225082870	K562	blood:	n/a	chr1:225082848-225082866
44	CTCF	chr1:225082780-225082930	GM12873	blood:	n/a	chr1:225082848-225082866
45	CTCF	chr1:225082730-225082936	SK-N-SH_RA	brain:	n/a	chr1:225082848-225082866
46	CTCF	chr1:225082757-225082983	IMR90	lung:	n/a	chr1:225082848-225082866
47	YY1	chr1:225082598-225082857	ECC-1	luminal epithelium:	n/a	chr1:225082762-225082774 chr1:225082737-225082749 chr1:225082738-225082760
48	CTCF	chr1:225082756-225082952	K562	blood:	n/a	chr1:225082848-225082866
49	SMC3	chr1:225082719-225082952	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr1:225082800-225082950	GM12871	blood:	n/a	chr1:225082848-225082866

Variant related genes	Relation type
DNAH14	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2449266	1.00[ASN][1000 genomes]
rs2501089	1.00[ASN][1000 genomes]
rs4484895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55692366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56981420	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58253035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58465537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59384753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60258106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60266138	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686436	1.00[ASN][1000 genomes]
rs74146288	1.00[ASN][1000 genomes]
rs74146289	1.00[ASN][1000 genomes]
rs74146292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146615	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74146620	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146622	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74147103	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74147105	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74149412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149415	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149424	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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