Variant report

Variant	rs577642600
Chromosome Location	chr5:178150132-178150133
allele	-/GG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178140402..178144156-chr5:178146582..178150587,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178130000-178150600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr5:178135400-178150600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:178135800-178155600	ZNF genes & repeats	Liver	Liver
4	chr5:178136200-178155200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr5:178136800-178150400	ZNF genes & repeats	Brain Substantia Nigra	brain
6	chr5:178136800-178150600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:178136800-178152800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr5:178137000-178150600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:178137000-178150600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
10	chr5:178137200-178151000	ZNF genes & repeats	Fetal Brain Female	brain
11	chr5:178137400-178150600	ZNF genes & repeats	Psoas Muscle	Psoas
12	chr5:178138400-178155600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:178138600-178150400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:178138600-178150600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:178138600-178150600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:178138600-178150600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:178138800-178150200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:178138800-178150400	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr5:178138800-178154400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr5:178138800-178155600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:178139000-178150600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr5:178139000-178150600	ZNF genes & repeats	NHEK	skin
23	chr5:178139000-178154000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr5:178139200-178150600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
25	chr5:178139200-178150600	ZNF genes & repeats	Left Ventricle	heart
26	chr5:178139200-178150600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
27	chr5:178139200-178150600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr5:178139200-178150800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr5:178139400-178154800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:178139600-178152800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr5:178139800-178150600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr5:178139800-178150600	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr5:178139800-178150600	ZNF genes & repeats	Brain Hippocampus Middle	brain
34	chr5:178139800-178150800	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr5:178139800-178151200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:178139800-178152600	ZNF genes & repeats	Ovary	ovary
37	chr5:178139800-178153400	ZNF genes & repeats	Brain Germinal Matrix	brain
38	chr5:178139800-178153400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
39	chr5:178139800-178154800	ZNF genes & repeats	Fetal Intestine Large	intestine
40	chr5:178140000-178150400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
41	chr5:178140000-178150600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:178140000-178150600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
43	chr5:178140200-178150600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr5:178140400-178150600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
45	chr5:178140600-178156600	Weak transcription	Hela-S3	cervix
46	chr5:178140800-178156000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
47	chr5:178141000-178151600	ZNF genes & repeats	Aorta	Aorta
48	chr5:178141000-178155000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr5:178141000-178155200	ZNF genes & repeats	Lung	lung
50	chr5:178141800-178150400	ZNF genes & repeats	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links