Variant report

Variant rs577969814
Chromosome Location chr9:6680542-6680543
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:6664600-6680600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr9:6670800-6680600 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr9:6678400-6680600 Weak transcription Placenta Placenta
4 chr9:6678400-6680800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr9:6680000-6681200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr9:6680000-6682400 Active TSS Liver Liver
7 chr9:6680000-6682800 Active TSS ES-I3 Cell Line embryonic stem cell
8 chr9:6680200-6680600 Enhancers Primary T cells fromperipheralblood blood
9 chr9:6680200-6680600 Enhancers Primary T helper cells fromperipheralblood blood
10 chr9:6680200-6681200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
11 chr9:6680200-6682800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr9:6680400-6680600 Flanking Active TSS HUES64 Cell Line embryonic stem cell
13 chr9:6680400-6680600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr9:6680400-6680600 Enhancers Primary T helper naive cells fromperipheralblood blood
15 chr9:6680400-6680600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
16 chr9:6680400-6680600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
17 chr9:6680400-6680600 Enhancers Primary Natural Killer cells fromperipheralblood blood
18 chr9:6680400-6680600 Enhancers Primary T killer naive cells fromperipheralblood blood
19 chr9:6680400-6680600 Enhancers Colonic Mucosa Colon
20 chr9:6680400-6680600 Active TSS Fetal Brain Male brain
21 chr9:6680400-6680600 Enhancers Fetal Kidney kidney
22 chr9:6680400-6680600 Enhancers Fetal Muscle Leg muscle
23 chr9:6680400-6680600 Active TSS Fetal Thymus thymus
24 chr9:6680400-6680600 Enhancers Skeletal Muscle Female skeletal muscle
25 chr9:6680400-6680600 Weak transcription Stomach Mucosa stomach
26 chr9:6680400-6680600 Flanking Active TSS A549 lung
27 chr9:6680400-6680600 Active TSS NH-A brain
28 chr9:6680400-6680800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
29 chr9:6680400-6680800 Flanking Active TSS HUES48 Cell Line embryonic stem cell
30 chr9:6680400-6680800 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
31 chr9:6680400-6680800 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
32 chr9:6680400-6680800 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
33 chr9:6680400-6680800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr9:6680400-6680800 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
35 chr9:6680400-6680800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
36 chr9:6680400-6680800 Flanking Active TSS Adipose Nuclei Adipose
37 chr9:6680400-6680800 Flanking Active TSS Fetal Brain Female brain
38 chr9:6680400-6680800 Active TSS Fetal Muscle Trunk muscle
39 chr9:6680400-6680800 Flanking Active TSS Stomach Smooth Muscle stomach
40 chr9:6680400-6680800 Flanking Active TSS Hela-S3 cervix
41 chr9:6680400-6680800 Flanking Active TSS HepG2 liver
42 chr9:6680400-6680800 Flanking Active TSS K562 blood
43 chr9:6680400-6681000 Flanking Active TSS Primary T cells from cord blood blood
44 chr9:6680400-6681000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
45 chr9:6680400-6681000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
46 chr9:6680400-6681000 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
47 chr9:6680400-6681000 Flanking Active TSS Muscle Satellite Cultured Cells --
48 chr9:6680400-6681000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
49 chr9:6680400-6681000 Flanking Active TSS GM12878-XiMat blood
50 chr9:6680400-6681000 Flanking Active TSS HMEC breast

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