Variant report

Variant	rs578039120
Chromosome Location	chr15:76431774-76431775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76220909..76222483-chr15:76431367..76432547,6	MCF-7	breast:
2	chr15:76102008..76102960-chr15:76431567..76432789,7	MCF-7	breast:
3	chr15:76349376..76350531-chr15:76431524..76433402,8	MCF-7	breast:
4	chr15:76348835..76350888-chr15:76431511..76432728,13	MCF-7	breast:
5	chr15:76431446..76432246-chr15:76440422..76441109,2	MCF-7	breast:
6	chr15:76350662..76351851-chr15:76431467..76432496,4	MCF-7	breast:
7	chr15:76350898..76351807-chr15:76431306..76432503,7	MCF-7	breast:
8	chr15:76431477..76432448-chr15:76439936..76440516,2	K562	blood:
9	chr15:76349503..76350850-chr15:76431448..76432473,12	K562	blood:
10	chr15:76195261..76196894-chr15:76430486..76432103,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76426400-76432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:76428200-76432000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76429000-76432000	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:76429400-76442800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:76429600-76442800	Weak transcription	Brain Angular Gyrus	brain
6	chr15:76430600-76431800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:76430600-76432400	Enhancers	HMEC	breast
8	chr15:76430600-76432800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:76430800-76432000	Enhancers	Esophagus	oesophagus
10	chr15:76430800-76432400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:76431000-76432200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:76431000-76432600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:76431000-76433000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:76431200-76432000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:76431200-76432200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:76431200-76432600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:76431200-76432600	Enhancers	Placenta	Placenta
18	chr15:76431200-76432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:76431200-76432800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr15:76431200-76432800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:76431200-76432800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:76431200-76432800	Enhancers	GM12878-XiMat	blood
23	chr15:76431400-76431800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:76431400-76431800	Enhancers	NHEK	skin
25	chr15:76431400-76432000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr15:76431400-76432000	Active TSS	Hela-S3	cervix
27	chr15:76431400-76432200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr15:76431600-76432000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:76431600-76432400	Enhancers	Pancreas	Pancrea
30	chr15:76431600-76432600	Enhancers	Fetal Thymus	thymus
31	chr15:76431600-76432800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:76431600-76433000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr15:76431600-76433000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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