Variant report

Variant	rs57820000
Chromosome Location	chr10:45757724-45757725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11815942	0.83[AFR][1000 genomes]
rs11819431	0.90[AFR][1000 genomes]
rs17153256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56047876	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58523051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60118031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60617740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128432	0.90[AFR][1000 genomes]
rs7899484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv947610	chr10:45752231-45769447	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45752800-45761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:45756800-45758000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:45757400-45758600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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