Variant report

Variant	rs57821233
Chromosome Location	chr1:211190759-211190760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211079490..211081106-chr1:211190726..211193541,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11119635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119661	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057232	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078498	0.81[AFR][1000 genomes]
rs12080732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933520	1.00[ASN][1000 genomes]
rs56919772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58216144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59431775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523281	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531557	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554031	0.80[AFR][1000 genomes]
rs7556274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211185400-211191800	Weak transcription	HSMMtube	muscle
6	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:211187200-211191800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:211187400-211190800	Weak transcription	Osteobl	bone
9	chr1:211187400-211191800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:211189200-211193000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:211189600-211191800	Weak transcription	HSMM	muscle
13	chr1:211190200-211191800	Weak transcription	Brain Substantia Nigra	brain
14	chr1:211190600-211190800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:211190600-211190800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr1:211190600-211190800	Enhancers	A549	lung
17	chr1:211190600-211191000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:211190600-211191000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:211190600-211191000	Enhancers	K562	blood
20	chr1:211190600-211191400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:211190600-211191600	Enhancers	Hela-S3	cervix
22	chr1:211190600-211192000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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