Variant report

Variant	rs57827085
Chromosome Location	chr1:220665563-220665564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12562686	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13375694	0.82[ASN][1000 genomes]
rs13376101	0.83[AFR][1000 genomes]
rs17007796	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28627679	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58913447	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58948810	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60807411	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516373	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7530302	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7553380	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7555789	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7556040	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220658600-220665800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:220664800-220666200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:220665400-220666000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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