Variant report

Variant	rs57834400
Chromosome Location	chr7:104684496-104684497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104678746..104681155-chr7:104682249..104684880,2	MCF-7	breast:
2	chr7:104680385..104683301-chr7:104683670..104687526,4	K562	blood:
3	chr7:104684090..104689143-chr7:104690596..104695842,7	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs56007018	1.00[AMR][1000 genomes]
rs56397729	1.00[AMR][1000 genomes]
rs57369490	1.00[AMR][1000 genomes]
rs57437921	1.00[AMR][1000 genomes]
rs58052615	1.00[AMR][1000 genomes]
rs58436549	1.00[AMR][1000 genomes]
rs58652912	1.00[AMR][1000 genomes]
rs58727441	1.00[AMR][1000 genomes]
rs59672048	1.00[AMR][1000 genomes]
rs59965211	1.00[AMR][1000 genomes]
rs60336509	1.00[AMR][1000 genomes]
rs60649764	1.00[AMR][1000 genomes]
rs60711291	1.00[AMR][1000 genomes]
rs60977282	1.00[AMR][1000 genomes]
rs61258714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404009	1.00[AMR][1000 genomes]
rs73404010	1.00[AMR][1000 genomes]
rs73404019	1.00[AMR][1000 genomes]
rs73404022	1.00[AMR][1000 genomes]
rs73404030	1.00[AMR][1000 genomes]
rs73404039	1.00[AMR][1000 genomes]
rs73404052	1.00[AMR][1000 genomes]
rs73404060	1.00[AMR][1000 genomes]
rs73404066	1.00[AMR][1000 genomes]
rs73404071	1.00[AMR][1000 genomes]
rs73404094	1.00[AMR][1000 genomes]
rs73417640	1.00[AMR][1000 genomes]
rs73417643	1.00[AMR][1000 genomes]
rs73417647	1.00[AMR][1000 genomes]
rs73417652	1.00[AMR][1000 genomes]
rs73417661	1.00[AMR][1000 genomes]
rs73417662	1.00[AMR][1000 genomes]
rs73417667	1.00[AMR][1000 genomes]
rs73417669	1.00[AMR][1000 genomes]
rs73417674	1.00[AMR][1000 genomes]
rs73419733	1.00[AMR][1000 genomes]
rs73419738	1.00[AMR][1000 genomes]
rs73419746	1.00[AMR][1000 genomes]
rs73419748	1.00[AMR][1000 genomes]
rs73419776	1.00[AMR][1000 genomes]
rs73419784	1.00[AMR][1000 genomes]
rs73419799	1.00[AMR][1000 genomes]
rs73419801	1.00[AMR][1000 genomes]
rs73421715	1.00[AMR][1000 genomes]
rs73421732	1.00[AMR][1000 genomes]
rs73421755	1.00[AMR][1000 genomes]
rs73421758	1.00[AMR][1000 genomes]
rs73421762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73714148	1.00[AMR][1000 genomes]
rs73714170	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104658600-104703800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104661800-104696000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:104668200-104685000	Weak transcription	HUVEC	blood vessel
4	chr7:104669600-104685000	Weak transcription	Esophagus	oesophagus
5	chr7:104670400-104685000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:104671800-104685000	Weak transcription	Aorta	Aorta
7	chr7:104673000-104685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:104674800-104685000	Weak transcription	Right Ventricle	heart
9	chr7:104675000-104684800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:104675000-104694200	Weak transcription	Spleen	Spleen
11	chr7:104675000-104694800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:104676200-104684800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:104676400-104687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:104678000-104812200	Strong transcription	Dnd41	blood
16	chr7:104678200-104688400	Weak transcription	Gastric	stomach
17	chr7:104678400-104685000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr7:104678400-104686800	Strong transcription	HSMM	muscle
19	chr7:104678800-104685000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:104679200-104684600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:104679600-104695800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:104679800-104684800	Weak transcription	Small Intestine	intestine
23	chr7:104680000-104685000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:104680200-104684600	Weak transcription	Stomach Mucosa	stomach
25	chr7:104680200-104686600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:104680600-104727000	Strong transcription	Fetal Thymus	thymus
27	chr7:104680800-104685000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:104680800-104688600	Strong transcription	Placenta	Placenta
29	chr7:104680800-104697400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr7:104681000-104685000	Weak transcription	Brain Angular Gyrus	brain
31	chr7:104681000-104691000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:104681200-104684800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:104681200-104684800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:104681200-104685000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:104681200-104685600	Strong transcription	Fetal Intestine Small	intestine
36	chr7:104681200-104685800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:104681200-104685800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:104681200-104686000	Strong transcription	Osteobl	bone
39	chr7:104681200-104686400	Strong transcription	NHLF	lung
40	chr7:104681200-104687200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:104681200-104689800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:104681200-104689800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:104681200-104690200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr7:104681200-104691400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:104681200-104692000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr7:104681200-104692800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:104681200-104697000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:104681200-104698400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:104681200-104698600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:104681200-104699200	Strong transcription	Rectal Mucosa Donor 29	rectum

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