Variant report

Variant	rs57845654
Chromosome Location	chr21:41088009-41088010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:41082155..41084385-chr21:41086359..41088868,2	K562	blood:
2	chr21:41085205..41088011-chr21:41112686..41115638,2	MCF-7	breast:
3	chr21:41078662..41082504-chr21:41085801..41089448,3	MCF-7	breast:
4	chr21:40889961..40890860-chr21:41087398..41088395,10	MCF-7	breast:
5	chr21:40889992..40890995-chr21:41087409..41088601,6	MCF-7	breast:
6	chr21:40889881..40890913-chr21:41087416..41088456,10	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10483058	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11909296	0.90[ASN][1000 genomes]
rs12233297	0.92[ASN][1000 genomes]
rs12233347	0.92[ASN][1000 genomes]
rs12233349	0.92[ASN][1000 genomes]
rs12626178	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12626186	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12626201	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12626282	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12627345	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12627452	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16998157	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16998163	0.81[ASN][1000 genomes]
rs16998166	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2410177	0.87[ASN][1000 genomes]
rs2410178	0.87[ASN][1000 genomes]
rs2837128	0.87[ASN][1000 genomes]
rs55707904	0.92[ASN][1000 genomes]
rs55901439	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56112847	0.99[ASN][1000 genomes]
rs57092838	0.98[ASN][1000 genomes]
rs57952155	0.92[ASN][1000 genomes]
rs58037814	0.92[ASN][1000 genomes]
rs58098823	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58955754	0.87[ASN][1000 genomes]
rs59101778	0.93[ASN][1000 genomes]
rs59297136	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59600504	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59639087	0.91[ASN][1000 genomes]
rs59710242	0.87[ASN][1000 genomes]
rs59990779	0.92[ASN][1000 genomes]
rs60661700	0.93[ASN][1000 genomes]
rs60728916	0.92[ASN][1000 genomes]
rs62235479	0.87[ASN][1000 genomes]
rs62235484	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62235485	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62235486	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62235487	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62235490	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62235491	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62235496	0.86[ASN][1000 genomes]
rs62235497	0.86[ASN][1000 genomes]
rs62235511	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7282484	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73363758	0.86[ASN][1000 genomes]
rs73904403	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73904404	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8127272	1.00[EUR][1000 genomes]
rs8127619	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv834099	chr21:41076873-41206030	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41069000-41095000	Weak transcription	Pancreas	Pancrea
2	chr21:41075800-41101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr21:41079400-41109600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr21:41083200-41103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:41087000-41091800	Weak transcription	Fetal Heart	heart
6	chr21:41087400-41088200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr21:41087400-41088200	Enhancers	Fetal Intestine Small	intestine
8	chr21:41087600-41088200	Enhancers	Fetal Brain Male	brain
9	chr21:41088000-41088200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr21:41088000-41088200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr21:41088000-41088200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr21:41088000-41088200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr21:41088000-41088200	Enhancers	Placenta	Placenta
14	chr21:41088000-41088200	Enhancers	Rectal Mucosa Donor 31	rectum

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