Variant report

Variant	rs57849457
Chromosome Location	chr7:124957747-124957748
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124699688..124701477-chr7:124956011..124957871,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11978926	0.93[EUR][1000 genomes]
rs17148155	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17148262	0.80[AFR][1000 genomes]
rs55650439	0.83[AFR][1000 genomes]
rs56165279	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57253560	1.00[ASN][1000 genomes]
rs57489531	1.00[ASN][1000 genomes]
rs57522378	0.93[EUR][1000 genomes]
rs58828027	1.00[ASN][1000 genomes]
rs61472727	1.00[ASN][1000 genomes]
rs6964369	1.00[ASN][1000 genomes]
rs73442547	1.00[ASN][1000 genomes]
rs73442550	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442552	1.00[ASN][1000 genomes]
rs73442571	1.00[ASN][1000 genomes]
rs73442573	1.00[ASN][1000 genomes]
rs73719368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73719374	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73719376	1.00[ASN][1000 genomes]
rs73719384	1.00[ASN][1000 genomes]
rs73719385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934031	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690818	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889140	chr7:124921028-125042024	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv464709	chr7:124921028-125068580	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv608345	chr7:124921028-125068580	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv889141	chr7:124935779-125072969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv818552	chr7:124957633-124962085	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124956600-124957800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:124957200-124958400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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