Variant report

Variant	rs57870334
Chromosome Location	chr8:99219705-99219706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99202505..99204170-chr8:99218597..99220761,2	MCF-7	breast:
2	chr8:99207817..99209426-chr8:99217584..99220282,2	MCF-7	breast:
3	chr8:99212561..99215208-chr8:99218672..99220234,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11988153	0.80[AMR][1000 genomes]
rs59193258	0.80[AMR][1000 genomes]
rs6990674	0.80[AMR][1000 genomes]
rs6990906	0.80[AMR][1000 genomes]
rs73701283	0.80[AMR][1000 genomes]
rs73701284	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
2	chr8:99198200-99239200	Weak transcription	Lung	lung
3	chr8:99203800-99252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:99205200-99259600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:99205600-99220000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:99206600-99224400	Weak transcription	Fetal Intestine Small	intestine
7	chr8:99206600-99239800	Weak transcription	Pancreas	Pancrea
8	chr8:99208000-99227600	Weak transcription	Esophagus	oesophagus
9	chr8:99211200-99243200	Weak transcription	Fetal Lung	lung
10	chr8:99212000-99220200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:99213200-99223600	Weak transcription	HMEC	breast
12	chr8:99213200-99225800	Weak transcription	Fetal Heart	heart
13	chr8:99213200-99239800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:99214600-99223400	Weak transcription	NHEK	skin
15	chr8:99215000-99223600	Weak transcription	Gastric	stomach
16	chr8:99215000-99227800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:99215400-99225000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:99215400-99227600	Weak transcription	Ovary	ovary
19	chr8:99215800-99225000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:99216400-99220000	Weak transcription	Osteobl	bone
21	chr8:99216600-99245400	Weak transcription	Stomach Mucosa	stomach
22	chr8:99216800-99224800	Weak transcription	Left Ventricle	heart
23	chr8:99217000-99229800	Weak transcription	Psoas Muscle	Psoas
24	chr8:99217000-99234400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr8:99217000-99234600	Weak transcription	Fetal Intestine Large	intestine
26	chr8:99217200-99222800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:99217200-99223600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:99217200-99229200	Weak transcription	Aorta	Aorta
29	chr8:99217400-99227600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr8:99217400-99238800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr8:99217600-99220200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:99217800-99220200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:99217800-99222400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr8:99217800-99235000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:99217800-99238600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr8:99218200-99227600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr8:99218400-99223600	Weak transcription	HSMM	muscle
38	chr8:99218400-99259000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr8:99219000-99220600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:99219400-99220600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:99219400-99222400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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