Variant report

Variant	rs57892381
Chromosome Location	chr6:150649473-150649474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1112870	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055585	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737283	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4368826	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4479947	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583250	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs585801	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62434565	0.86[ASN][1000 genomes]
rs654694	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6557468	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs656492	0.88[ASN][1000 genomes]
rs6919940	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371950	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9397886	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5538	chr6:150640370-150652751	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150647800-150649600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:150648200-150649600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:150648600-150649600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150648800-150650200	Enhancers	K562	blood
6	chr6:150648800-150650600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150649000-150650400	Enhancers	Psoas Muscle	Psoas
8	chr6:150649000-150656600	Weak transcription	Right Atrium	heart
9	chr6:150649200-150650200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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