Variant report

Variant	rs5790015
Chromosome Location	chr11:18119397-18119398
allele	AA/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18114312..18117170-chr11:18118246..18120137,2	K562	blood:
2	chr11:18108743..18110773-chr11:18118441..18121392,2	K562	blood:
3	chr11:18118808..18120396-chr11:18125580..18127566,2	K562	blood:
4	chr11:18036213..18038054-chr11:18118246..18120571,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166788	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10500831	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832880	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832882	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024458	0.83[EUR][1000 genomes]
rs11024460	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11024461	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024468	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024476	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024482	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024485	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11024489	0.90[ASN][1000 genomes]
rs11024493	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12363226	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364327	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792460	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1824017	0.80[ASN][1000 genomes]
rs1975777	0.83[ASN][1000 genomes]
rs2168361	0.96[ASN][1000 genomes]
rs2263407	0.88[ASN][1000 genomes]
rs2468832	0.82[ASN][1000 genomes]
rs2468841	0.88[ASN][1000 genomes]
rs2468842	0.88[ASN][1000 genomes]
rs2956631	0.86[ASN][1000 genomes]
rs35447333	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4052539	0.96[ASN][1000 genomes]
rs61882530	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117439	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7118373	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7131255	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131454	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929920	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7933259	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7934091	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942794	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7943725	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7943884	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs907923	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv27960	chr11:18119398-18119399	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18098200-18124400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:18099000-18125800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:18099800-18124800	Strong transcription	Dnd41	blood
4	chr11:18100200-18126200	Weak transcription	Small Intestine	intestine
5	chr11:18100400-18126000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:18100600-18125600	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:18100800-18126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:18101000-18122000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:18103400-18126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:18104800-18125200	Strong transcription	Primary T cells from cord blood	blood
11	chr11:18104800-18125200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:18105400-18125800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:18107200-18126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:18107400-18121600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:18107400-18125800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:18107600-18125400	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:18107800-18126200	Weak transcription	NHDF-Ad	bronchial
18	chr11:18108200-18125200	Strong transcription	Primary B cells from cord blood	blood
19	chr11:18108600-18122800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:18110600-18126200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:18111000-18123600	Weak transcription	Aorta	Aorta
22	chr11:18111000-18126600	Weak transcription	Right Ventricle	heart
23	chr11:18111200-18125200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:18113000-18125600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:18113200-18119800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:18113200-18119800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:18113400-18125400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr11:18113800-18120000	Strong transcription	Thymus	Thymus
29	chr11:18114200-18125400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:18115600-18123200	Weak transcription	Osteobl	bone
31	chr11:18115800-18126000	Weak transcription	Fetal Heart	heart
32	chr11:18116000-18122600	Weak transcription	Fetal Brain Male	brain
33	chr11:18116000-18122600	Weak transcription	A549	lung
34	chr11:18116000-18125800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:18116000-18126000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:18116000-18127000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:18116200-18121000	Weak transcription	Fetal Lung	lung
38	chr11:18116200-18121000	Weak transcription	NH-A	brain
39	chr11:18116200-18123400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:18116200-18123400	Weak transcription	Fetal Intestine Small	intestine
41	chr11:18116200-18126600	Weak transcription	Psoas Muscle	Psoas
42	chr11:18116400-18122600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:18116800-18122600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:18116800-18122600	Weak transcription	GM12878-XiMat	blood
45	chr11:18116800-18122800	Weak transcription	Spleen	Spleen
46	chr11:18116800-18123400	Weak transcription	NHLF	lung
47	chr11:18116800-18124800	Weak transcription	Pancreas	Pancrea
48	chr11:18117000-18126200	Weak transcription	Gastric	stomach
49	chr11:18117000-18126400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:18117400-18119400	Weak transcription	Fetal Brain Female	brain

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