Variant report

Variant	rs57911758
Chromosome Location	chr8:10980941-10980942
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTMR9-1	chr8:10980891-10982326	ENSG00000247665
2	lnc-AF131215.3.1-1	chr8:10980891-10982327	ENSG00000254936.3
3	lnc-AF131215.3.1-1	chr8:10980891-10982327	ENSG00000254936.3
4	lnc-AF131215.3.1-1	chr8:10980891-10982327	NONHSAT125036

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10090120	0.89[AFR][1000 genomes]
rs10094029	0.93[AFR][1000 genomes]
rs10094620	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095695	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095840	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096326	1.00[AMR][1000 genomes]
rs10097387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100837	1.00[AMR][1000 genomes]
rs10103361	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106007	1.00[AMR][1000 genomes]
rs10106157	1.00[AMR][1000 genomes]
rs10106838	1.00[AMR][1000 genomes]
rs10107951	1.00[AMR][1000 genomes]
rs10109455	1.00[AMR][1000 genomes]
rs10109542	1.00[AMR][1000 genomes]
rs10481453	1.00[AMR][1000 genomes]
rs17152810	1.00[AMR][1000 genomes]
rs17152846	1.00[AMR][1000 genomes]
rs17152847	1.00[AMR][1000 genomes]
rs17152852	1.00[AMR][1000 genomes]
rs17152856	1.00[AMR][1000 genomes]
rs28398187	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28530758	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588681	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28601819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4401812	1.00[AMR][1000 genomes]
rs4415276	1.00[AMR][1000 genomes]
rs56021916	1.00[AMR][1000 genomes]
rs56387861	1.00[AMR][1000 genomes]
rs56759377	1.00[AMR][1000 genomes]
rs57861728	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58893927	1.00[AMR][1000 genomes]
rs60530116	1.00[AMR][1000 genomes]
rs60859757	1.00[AMR][1000 genomes]
rs61484474	1.00[AMR][1000 genomes]
rs61524162	1.00[AMR][1000 genomes]
rs7010804	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7015231	1.00[AMR][1000 genomes]
rs73530537	1.00[AMR][1000 genomes]
rs73530569	1.00[AMR][1000 genomes]
rs73530600	1.00[AMR][1000 genomes]
rs73539337	1.00[AMR][1000 genomes]
rs73539361	1.00[AMR][1000 genomes]
rs73539402	1.00[AMR][1000 genomes]
rs73541207	1.00[AMR][1000 genomes]
rs73541222	1.00[AMR][1000 genomes]
rs73541224	1.00[AMR][1000 genomes]
rs73541227	1.00[AMR][1000 genomes]
rs73541254	1.00[AMR][1000 genomes]
rs73543362	1.00[AMR][1000 genomes]
rs73543365	1.00[AMR][1000 genomes]
rs73545491	1.00[AMR][1000 genomes]
rs73665013	1.00[AMR][1000 genomes]
rs7814341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1027845	chr8:10959666-10995565	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv1019796	chr8:10979442-11010826	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10963000-10981200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:10965800-10981600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:10966200-10981400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:10966200-10999000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:10975000-10981000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:10975000-10981200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:10975600-10981000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:10975600-10981400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr8:10975800-10981200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:10978000-10981200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:10980000-10981400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:10980200-10981200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr8:10980400-10981400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr8:10980600-10982000	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:10980800-10981400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:10980800-10981600	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links