Variant report

Variant	rs57917402
Chromosome Location	chr1:179510640-179510641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13374433	1.00[AFR][1000 genomes]
rs16854255	1.00[AFR][1000 genomes]
rs5005771	1.00[AFR][1000 genomes]
rs56878927	1.00[AFR][1000 genomes]
rs57596064	0.91[AFR][1000 genomes]
rs58673658	1.00[AFR][1000 genomes]
rs58812147	1.00[AFR][1000 genomes]
rs60083132	0.91[AFR][1000 genomes]
rs60389419	1.00[AFR][1000 genomes]
rs60585777	1.00[AFR][1000 genomes]
rs61334774	1.00[AFR][1000 genomes]
rs61347116	1.00[AFR][1000 genomes]
rs61378320	0.91[AFR][1000 genomes]
rs61581713	0.91[AFR][1000 genomes]
rs61583057	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522746	chr1:179501365-179518459	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179487200-179515000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:179510600-179511000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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