Variant report

Variant	rs57923940
Chromosome Location	chr15:79131520-79131521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4073321	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56144940	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56179040	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57185710	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57547095	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58158830	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58257692	0.83[AMR][1000 genomes]
rs58858460	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59973885	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60589519	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61477430	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6495342	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7402370	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7402487	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7403094	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7403100	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8041607	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79118400-79138400	Weak transcription	Right Atrium	heart
2	chr15:79125200-79133000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:79129000-79131800	Weak transcription	GM12878-XiMat	blood
4	chr15:79130400-79132800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:79130800-79131800	Weak transcription	Aorta	Aorta
6	chr15:79130800-79132400	Weak transcription	Placenta	Placenta
7	chr15:79130800-79133000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:79130800-79135800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:79131000-79132200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:79131000-79132400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:79131000-79133000	Weak transcription	HSMMtube	muscle
12	chr15:79131200-79132800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:79131200-79133000	Weak transcription	Fetal Lung	lung
14	chr15:79131400-79133000	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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