Variant report

Variant	rs57929471
Chromosome Location	chr5:75691020-75691021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10462539	0.82[ASN][1000 genomes]
rs10462540	0.84[ASN][1000 genomes]
rs11738470	0.85[ASN][1000 genomes]
rs11740038	0.85[ASN][1000 genomes]
rs11744637	0.81[ASN][1000 genomes]
rs11747990	0.81[ASN][1000 genomes]
rs13357820	0.83[ASN][1000 genomes]
rs28386181	0.83[ASN][1000 genomes]
rs3886042	0.81[ASN][1000 genomes]
rs3886043	0.83[ASN][1000 genomes]
rs4254886	0.81[ASN][1000 genomes]
rs55995866	0.82[ASN][1000 genomes]
rs6895725	0.84[ASN][1000 genomes]
rs7706926	0.81[ASN][1000 genomes]
rs7707426	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75677800-75691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:75685000-75691200	Enhancers	Primary hematopoietic stem cells	blood
3	chr5:75685000-75691200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:75685000-75691200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:75685000-75691400	Enhancers	Primary T cells from cord blood	blood
6	chr5:75685000-75691400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:75685200-75697400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:75685200-75697600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:75685400-75691200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr5:75685400-75691200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:75687000-75691200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr5:75687000-75691200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:75687200-75691200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr5:75689000-75691200	Enhancers	Fetal Thymus	thymus
15	chr5:75689000-75697400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:75689200-75696800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:75689200-75698200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:75689400-75691800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:75689400-75697600	Weak transcription	K562	blood
20	chr5:75690600-75691400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:75690800-75691200	Enhancers	HepG2	liver
22	chr5:75691000-75691200	Enhancers	Esophagus	oesophagus

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