Variant report
| Variant | rs57937650 |
|---|---|
| Chromosome Location | chr8:110506592-110506593 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110502694..110504947-chr8:110505259..110508186,2 | K562 | blood: | |
| 2 | chr8:110500097..110503001-chr8:110504877..110506686,2 | MCF-7 | breast: | |
| 3 | chr8:110506183..110508052-chr8:110509587..110512256,2 | MCF-7 | breast: | |
| 4 | chr8:110397373..110399828-chr8:110505690..110508375,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PKHD1L1 | TF binding region |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16879336 | 1.00[AMR][1000 genomes] |
| rs16879428 | 1.00[AMR][1000 genomes] |
| rs16879553 | 1.00[AMR][1000 genomes] |
| rs16879567 | 1.00[AMR][1000 genomes] |
| rs16879636 | 1.00[AMR][1000 genomes] |
| rs1892762 | 1.00[AMR][1000 genomes] |
| rs1979299 | 1.00[AMR][1000 genomes] |
| rs1979300 | 1.00[AMR][1000 genomes] |
| rs2124980 | 1.00[AMR][1000 genomes] |
| rs55752435 | 1.00[AMR][1000 genomes] |
| rs56238419 | 1.00[AMR][1000 genomes] |
| rs56932873 | 1.00[AMR][1000 genomes] |
| rs57170073 | 1.00[AMR][1000 genomes] |
| rs59326650 | 1.00[AMR][1000 genomes] |
| rs59478583 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59982879 | 1.00[AMR][1000 genomes] |
| rs60463599 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700649 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700650 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700652 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700655 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700858 | 1.00[AMR][1000 genomes] |
| rs73700860 | 1.00[AMR][1000 genomes] |
| rs73700867 | 1.00[AMR][1000 genomes] |
| rs73700869 | 1.00[AMR][1000 genomes] |
| rs73700876 | 1.00[AMR][1000 genomes] |
| rs73700886 | 1.00[AMR][1000 genomes] |
| rs73704006 | 1.00[AMR][1000 genomes] |
| rs73704009 | 1.00[AMR][1000 genomes] |
| rs73704016 | 1.00[AMR][1000 genomes] |
| rs73704022 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110506400-110506800 | Active TSS | K562 | blood |
