Variant report

Variant	rs57953549
Chromosome Location	chr11:93785467-93785468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93783219..93786344-chr11:93787044..93789064,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10501813	0.88[ASN][1000 genomes]
rs11825709	0.83[ASN][1000 genomes]
rs1401184	0.88[ASN][1000 genomes]
rs1518560	0.84[ASN][1000 genomes]
rs1589166	0.88[ASN][1000 genomes]
rs1607401	0.88[ASN][1000 genomes]
rs16919902	0.88[ASN][1000 genomes]
rs1850656	0.83[ASN][1000 genomes]
rs1878799	0.88[ASN][1000 genomes]
rs1878801	0.88[ASN][1000 genomes]
rs1894165	0.88[ASN][1000 genomes]
rs1894166	0.85[ASN][1000 genomes]
rs1945786	0.84[ASN][1000 genomes]
rs1945787	0.84[ASN][1000 genomes]
rs2020351	0.84[ASN][1000 genomes]
rs2102857	0.88[ASN][1000 genomes]
rs2139089	0.84[ASN][1000 genomes]
rs2176563	0.88[ASN][1000 genomes]
rs2203793	0.88[ASN][1000 genomes]
rs2213108	0.83[ASN][1000 genomes]
rs2213110	0.85[ASN][1000 genomes]
rs2399750	0.84[ASN][1000 genomes]
rs2460050	0.84[ASN][1000 genomes]
rs2460052	0.82[ASN][1000 genomes]
rs2460053	0.88[ASN][1000 genomes]
rs2460064	0.85[ASN][1000 genomes]
rs2460065	0.88[ASN][1000 genomes]
rs2460069	0.84[ASN][1000 genomes]
rs2460070	0.88[ASN][1000 genomes]
rs2462733	0.88[ASN][1000 genomes]
rs2462735	0.88[ASN][1000 genomes]
rs2462756	0.87[ASN][1000 genomes]
rs2462757	0.82[ASN][1000 genomes]
rs2462758	0.88[ASN][1000 genomes]
rs2462759	0.84[ASN][1000 genomes]
rs2462760	0.86[ASN][1000 genomes]
rs2462763	0.84[ASN][1000 genomes]
rs2511380	0.84[ASN][1000 genomes]
rs2511403	0.85[ASN][1000 genomes]
rs2511407	0.88[ASN][1000 genomes]
rs2511411	0.88[ASN][1000 genomes]
rs56938392	0.86[ASN][1000 genomes]
rs57106172	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57586533	0.83[ASN][1000 genomes]
rs59689949	0.83[ASN][1000 genomes]
rs59793398	0.86[ASN][1000 genomes]
rs66514329	0.88[ASN][1000 genomes]
rs66538341	0.93[ASN][1000 genomes]
rs66977226	0.83[ASN][1000 genomes]
rs67001808	0.86[ASN][1000 genomes]
rs67243356	0.93[ASN][1000 genomes]
rs67412659	0.86[ASN][1000 genomes]
rs67988338	0.83[ASN][1000 genomes]
rs72964631	0.86[ASN][1000 genomes]
rs72964645	0.86[ASN][1000 genomes]
rs72964666	0.88[ASN][1000 genomes]
rs73551180	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73552910	0.88[ASN][1000 genomes]
rs73564796	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73564799	0.86[ASN][1000 genomes]
rs959342	0.85[ASN][1000 genomes]
rs959343	0.85[ASN][1000 genomes]
rs978777	0.87[ASN][1000 genomes]
rs989088	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93769800-93787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:93780200-93793800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:93780600-93787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:93784400-93787600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:93784600-93788200	Weak transcription	NHEK	skin

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