The 2.0 version of rSNPBase

Variant report

Variant rs57961020
Chromosome Location chr1:220727055-220727056
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220718000-220738600 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:220718600-220731200 Weak transcription Esophagus oesophagus
3 chr1:220718600-220738600 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr1:220718600-220739000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:220722600-220738800 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr1:220723200-220738600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr1:220724200-220727800 Enhancers Fetal Heart heart
8 chr1:220724400-220727400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:220724400-220727400 Weak transcription Stomach Smooth Muscle stomach
10 chr1:220724400-220743400 Weak transcription Fetal Brain Male brain
11 chr1:220724600-220729000 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr1:220724600-220729200 Weak transcription Adipose Nuclei Adipose
13 chr1:220724600-220737600 Weak transcription Fetal Brain Female brain
14 chr1:220724600-220741600 Weak transcription Aorta Aorta
15 chr1:220724800-220728800 Weak transcription Fetal Muscle Leg muscle
16 chr1:220724800-220738800 Weak transcription Right Atrium heart
17 chr1:220725200-220728000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:220726000-220732600 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr1:220726200-220727200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:220726200-220727400 Enhancers NHEK skin
21 chr1:220726200-220728000 Enhancers Left Ventricle heart
22 chr1:220726600-220727400 Strong transcription Fetal Muscle Trunk muscle
23 chr1:220726800-220727800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:220726800-220729000 Strong transcription Cortex derived primary cultured neurospheres brain
25 chr1:220726800-220729000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:220726800-220729400 Weak transcription HMEC breast
27 chr1:220727000-220727200 Genic enhancers Brain Germinal Matrix brain

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Last update: Aug 31, 2015