Variant report

Variant	rs57969989
Chromosome Location	chr3:118561365-118561366
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13316138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9838210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963353	chr3:118554595-118572118	Active TSS ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118561000-118561600	Active TSS	A549	lung
2	chr3:118561000-118561600	Active TSS	K562	blood
3	chr3:118561200-118561600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:118561200-118561600	ZNF genes & repeats	Dnd41	blood
5	chr3:118561200-118561600	Active TSS	Hela-S3	cervix
6	chr3:118561200-118562000	Active TSS	HepG2	liver
7	chr3:118561200-118562200	ZNF genes & repeats	Aorta	Aorta
8	chr3:118561200-118562600	ZNF genes & repeats	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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