Variant report

Variant	rs579786
Chromosome Location	chr6:38908515-38908516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38902804..38905532-chr6:38908040..38910496,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10305444	1.00[CHB][hapmap]
rs10305487	1.00[CHB][hapmap]
rs10305513	1.00[CHB][hapmap]
rs10305515	1.00[CHB][hapmap]
rs10305519	1.00[CHB][hapmap]
rs10484847	1.00[CHB][hapmap]
rs11756771	1.00[CHB][hapmap]
rs12192779	1.00[CHB][hapmap]
rs12194119	1.00[CHB][hapmap]
rs12197353	1.00[CHB][hapmap]
rs12206059	1.00[CHB][hapmap]
rs12215108	1.00[CHB][hapmap]
rs12664132	1.00[CHB][hapmap]
rs13192864	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap]
rs13201998	1.00[CHB][hapmap]
rs13207718	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1738248	1.00[CHB][hapmap]
rs17421805	0.89[ASW][hapmap];1.00[CHB][hapmap];0.82[LWK][hapmap]
rs17422753	1.00[CHB][hapmap]
rs17552881	1.00[CHB][hapmap]
rs17632688	1.00[CHB][hapmap]
rs34972145	0.86[AFR][1000 genomes]
rs4279429	1.00[CHB][hapmap]
rs6905213	1.00[CHB][hapmap]
rs6930771	1.00[CHB][hapmap]
rs6933930	1.00[CHB][hapmap]
rs71571356	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv602962	chr6:38907202-38940282	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv528852	chr6:38908515-38910375	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38906800-38909800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links