Variant report

Variant	rs57980126
Chromosome Location	chr8:10013953-10013954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10088663	0.95[ASN][1000 genomes]
rs10088890	0.95[ASN][1000 genomes]
rs10090114	0.95[ASN][1000 genomes]
rs1023961	0.95[ASN][1000 genomes]
rs11984513	0.95[ASN][1000 genomes]
rs11986122	0.91[ASN][1000 genomes]
rs11993089	0.91[ASN][1000 genomes]
rs13249486	0.90[ASN][1000 genomes]
rs13282106	0.80[ASN][1000 genomes]
rs1484639	0.80[ASN][1000 genomes]
rs1484640	0.80[ASN][1000 genomes]
rs1484642	0.90[ASN][1000 genomes]
rs1484644	0.90[ASN][1000 genomes]
rs1521190	0.90[ASN][1000 genomes]
rs1531918	0.90[ASN][1000 genomes]
rs1531919	0.90[ASN][1000 genomes]
rs17151244	0.90[ASN][1000 genomes]
rs17689563	0.90[ASN][1000 genomes]
rs17689674	0.80[ASN][1000 genomes]
rs2046399	0.90[ASN][1000 genomes]
rs2046400	0.90[ASN][1000 genomes]
rs2062333	0.80[ASN][1000 genomes]
rs2220149	0.95[ASN][1000 genomes]
rs2220150	0.95[ASN][1000 genomes]
rs2628140	0.85[ASN][1000 genomes]
rs2661755	0.90[ASN][1000 genomes]
rs4841281	0.85[ASN][1000 genomes]
rs4841284	0.95[ASN][1000 genomes]
rs4841285	0.95[ASN][1000 genomes]
rs569446	0.90[ASN][1000 genomes]
rs57726127	0.90[ASN][1000 genomes]
rs58133870	1.00[ASN][1000 genomes]
rs58176018	0.80[ASN][1000 genomes]
rs58437548	1.00[ASN][1000 genomes]
rs59759359	0.85[ASN][1000 genomes]
rs60465334	0.85[ASN][1000 genomes]
rs658385	0.85[ASN][1000 genomes]
rs685353	0.85[ASN][1000 genomes]
rs7005350	0.90[ASN][1000 genomes]
rs728878	0.85[ASN][1000 genomes]
rs73664934	0.80[ASN][1000 genomes]
rs7812741	0.85[ASN][1000 genomes]
rs7823314	0.90[ASN][1000 genomes]
rs7833387	0.90[ASN][1000 genomes]
rs7833895	0.90[ASN][1000 genomes]
rs814405	0.85[ASN][1000 genomes]
rs923046	0.95[ASN][1000 genomes]
rs9329216	0.95[ASN][1000 genomes]
rs963592	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996400-10020200	Weak transcription	Pancreas	Pancrea
2	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
3	chr8:10003400-10026600	Weak transcription	Liver	Liver
4	chr8:10008200-10021400	Weak transcription	Fetal Brain Female	brain
5	chr8:10008800-10016600	Weak transcription	Fetal Brain Male	brain
6	chr8:10008800-10018400	Weak transcription	Brain Germinal Matrix	brain
7	chr8:10010400-10015200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:10010600-10014200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:10011000-10015400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:10011000-10015800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:10011000-10019200	Weak transcription	Left Ventricle	heart
12	chr8:10011000-10023800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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