Variant report

Variant	rs58006889
Chromosome Location	chr10:25798715-25798716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1329253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926013	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16926017	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57001691	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58481217	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58781151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61549511	0.90[AMR][1000 genomes]
rs74124044	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25791600-25800400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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