Variant report

Variant	rs58015383
Chromosome Location	chr12:87886668-87886669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60069679	1.00[AMR][1000 genomes]
rs73411343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411346	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411350	1.00[AMR][1000 genomes]
rs73411377	1.00[AMR][1000 genomes]
rs73423452	1.00[AMR][1000 genomes]
rs73425323	1.00[AMR][1000 genomes]
rs73425331	1.00[AMR][1000 genomes]
rs73425341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87886000-87887400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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