Variant report

Variant	rs58019654
Chromosome Location	chr11:76301054-76301055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76290103..76291705-chr11:76300211..76301911,2	MCF-7	breast:
2	chr11:76154912..76157253-chr11:76299607..76302337,2	K562	blood:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160346	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10219259	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501423	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236788	0.94[EUR][1000 genomes]
rs11236793	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236794	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273530	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274380	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276178	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280432	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281497	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12286370	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12286377	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28559296	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56785389	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57046912	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57873830	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61324790	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71469525	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73495480	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76298200-76303200	Enhancers	Placenta	Placenta
2	chr11:76298200-76305000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr11:76298400-76301400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:76299200-76301400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:76299200-76301800	Enhancers	Fetal Stomach	stomach
6	chr11:76299200-76301800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:76299200-76302000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:76299400-76301600	Enhancers	Right Atrium	heart
9	chr11:76299400-76303400	Enhancers	Spleen	Spleen
10	chr11:76299400-76304400	Enhancers	Fetal Thymus	thymus
11	chr11:76299600-76301200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:76299600-76301200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr11:76299800-76301800	Enhancers	Fetal Muscle Trunk	muscle
14	chr11:76299800-76302800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:76299800-76303000	Enhancers	Colonic Mucosa	Colon
16	chr11:76299800-76303000	Enhancers	Lung	lung
17	chr11:76300000-76301200	Enhancers	Right Ventricle	heart
18	chr11:76300000-76302800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:76300200-76302000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr11:76300400-76301400	Weak transcription	Stomach Mucosa	stomach
21	chr11:76300400-76302200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:76300400-76308800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:76300600-76301800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:76300600-76301800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:76300600-76304200	Weak transcription	Pancreas	Pancrea
26	chr11:76300800-76303200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:76300800-76303400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76300800-76303400	Weak transcription	Esophagus	oesophagus
29	chr11:76300800-76303600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:76300800-76303800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:76301000-76302000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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