Variant report

Variant	rs58019979
Chromosome Location	chr2:33652348-33652349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33645952..33647644-chr2:33651706..33654003,2	MCF-7	breast:
2	chr2:33645116..33647269-chr2:33650448..33653137,2	K562	blood:
3	chr2:33650872..33654290-chr2:33656071..33658899,3	K562	blood:
4	chr2:33644817..33647269-chr2:33650448..33652566,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17012993	1.00[AMR][1000 genomes]
rs17038528	1.00[AMR][1000 genomes]
rs17038533	1.00[AMR][1000 genomes]
rs3845776	1.00[AMR][1000 genomes]
rs56191261	1.00[AMR][1000 genomes]
rs57043920	1.00[AMR][1000 genomes]
rs57555315	1.00[AMR][1000 genomes]
rs58447746	1.00[AMR][1000 genomes]
rs59802064	1.00[AMR][1000 genomes]
rs60690063	1.00[AMR][1000 genomes]
rs60756139	1.00[AMR][1000 genomes]
rs61163843	1.00[AMR][1000 genomes]
rs61332576	1.00[AMR][1000 genomes]
rs6706960	1.00[AMR][1000 genomes]
rs6707278	1.00[AMR][1000 genomes]
rs6710588	1.00[AMR][1000 genomes]
rs6719885	1.00[AMR][1000 genomes]
rs6725045	1.00[AMR][1000 genomes]
rs6739497	1.00[AMR][1000 genomes]
rs6752263	1.00[AMR][1000 genomes]
rs73925003	1.00[AMR][1000 genomes]
rs73925009	1.00[AMR][1000 genomes]
rs73925011	1.00[AMR][1000 genomes]
rs73925681	1.00[AMR][1000 genomes]
rs73925695	1.00[AMR][1000 genomes]
rs73925697	1.00[AMR][1000 genomes]
rs73925698	1.00[AMR][1000 genomes]
rs73925700	1.00[AMR][1000 genomes]
rs73926609	1.00[AMR][1000 genomes]
rs73927363	1.00[AMR][1000 genomes]
rs73927504	1.00[AMR][1000 genomes]
rs73927505	1.00[AMR][1000 genomes]
rs73927506	1.00[AMR][1000 genomes]
rs73927507	1.00[AMR][1000 genomes]
rs73927508	1.00[AMR][1000 genomes]
rs73929408	1.00[AMR][1000 genomes]
rs73929409	1.00[AMR][1000 genomes]
rs73929412	1.00[AMR][1000 genomes]
rs73929413	1.00[AMR][1000 genomes]
rs73929415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv2762447	chr2:33643724-33674484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33645200-33667800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33645800-33661200	Weak transcription	Fetal Kidney	kidney
3	chr2:33650200-33652800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:33650400-33652400	Enhancers	HUVEC	blood vessel
5	chr2:33650400-33652600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:33650400-33652600	Enhancers	NHEK	skin
7	chr2:33650400-33652800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:33650400-33652800	Enhancers	HMEC	breast
9	chr2:33650400-33652800	Enhancers	NH-A	brain
10	chr2:33650400-33652800	Enhancers	NHDF-Ad	bronchial
11	chr2:33650400-33652800	Enhancers	Osteobl	bone
12	chr2:33650400-33653400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:33650600-33652400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:33650600-33652400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:33650600-33652400	Enhancers	NHLF	lung
16	chr2:33650800-33652400	Enhancers	Hela-S3	cervix
17	chr2:33651400-33652400	Enhancers	Fetal Heart	heart
18	chr2:33651600-33652400	Enhancers	HSMM	muscle
19	chr2:33651800-33652400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:33651800-33652400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:33651800-33652400	Enhancers	Right Ventricle	heart
22	chr2:33651800-33653400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:33652000-33661200	Weak transcription	Psoas Muscle	Psoas
24	chr2:33652000-33661200	Weak transcription	Right Atrium	heart

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