Variant report

Variant	rs58036982
Chromosome Location	chr6:102127952-102127953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs59376542	1.00[AMR][1000 genomes]
rs73761382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73761383	1.00[AMR][1000 genomes]
rs73761388	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73761389	1.00[AMR][1000 genomes]
rs73761390	1.00[AMR][1000 genomes]
rs73761397	1.00[AMR][1000 genomes]
rs73761398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73761431	1.00[AMR][1000 genomes]
rs73761432	1.00[AMR][1000 genomes]
rs73764503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73764505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73764506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73764509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498674	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv933081	chr6:102124766-102130637	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102125600-102129000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:102125800-102130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:102126800-102129600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:102126800-102129600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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