Variant report

Variant	rs58039301
Chromosome Location	chr11:76475038-76475039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76463120..76464705-chr11:76473481..76475245,2	K562	blood:
2	chr11:76457361..76460008-chr11:76475009..76477808,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10459050	0.89[ASN][1000 genomes]
rs11236925	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11236932	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11236933	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11236934	0.87[ASN][1000 genomes]
rs3740771	1.00[AMR][1000 genomes]
rs3740772	0.89[AMR][1000 genomes]
rs3758712	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55738350	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56941231	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73503652	0.89[ASN][1000 genomes]
rs7925095	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7925436	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7925977	0.82[ASN][1000 genomes]
rs7941392	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
4	chr11:76472200-76477200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76473000-76478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:76473600-76483200	Enhancers	Esophagus	oesophagus
7	chr11:76473800-76475200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr11:76473800-76475400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:76473800-76475400	Enhancers	Small Intestine	intestine
10	chr11:76473800-76475600	Enhancers	Adipose Nuclei	Adipose
11	chr11:76473800-76479200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:76474000-76475400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:76474000-76475400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:76474000-76475400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:76474000-76475600	Enhancers	Stomach Mucosa	stomach
16	chr11:76474000-76475800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:76474000-76475800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:76474000-76475800	Enhancers	Right Atrium	heart
19	chr11:76474000-76476000	Enhancers	HMEC	breast
20	chr11:76474000-76476000	Enhancers	HUVEC	blood vessel
21	chr11:76474000-76476200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:76474000-76476200	Enhancers	Lung	lung
23	chr11:76474000-76478800	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:76474000-76481000	Enhancers	Fetal Muscle Trunk	muscle
25	chr11:76474000-76481200	Enhancers	Spleen	Spleen
26	chr11:76474000-76485600	Enhancers	Left Ventricle	heart
27	chr11:76474200-76475200	Enhancers	Stomach Smooth Muscle	stomach
28	chr11:76474200-76475400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:76474200-76475400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:76474200-76475400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:76474200-76475400	Enhancers	Brain Angular Gyrus	brain
32	chr11:76474200-76475400	Enhancers	NHDF-Ad	bronchial
33	chr11:76474200-76475400	Enhancers	NHLF	lung
34	chr11:76474200-76475800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:76474200-76475800	Enhancers	Brain Germinal Matrix	brain
36	chr11:76474200-76476200	Enhancers	NH-A	brain
37	chr11:76474200-76476400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:76474200-76477400	Enhancers	Fetal Lung	lung
39	chr11:76474200-76478200	Enhancers	Right Ventricle	heart
40	chr11:76474400-76475200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:76474400-76475400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:76474400-76475400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:76474400-76475400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:76474400-76475400	Enhancers	Colon Smooth Muscle	Colon
45	chr11:76474400-76475400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:76474400-76475400	Enhancers	HSMMtube	muscle
47	chr11:76474400-76475400	Flanking Active TSS	NHEK	skin
48	chr11:76474400-76475600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:76474400-76475600	Enhancers	Brain Anterior Caudate	brain
50	chr11:76474400-76475600	Enhancers	Ovary	ovary

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