Variant report

Variant	rs58054764
Chromosome Location	chr12:86527799-86527800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11830448	1.00[EUR][1000 genomes]
rs12302310	1.00[EUR][1000 genomes]
rs12302551	1.00[EUR][1000 genomes]
rs12319410	1.00[EUR][1000 genomes]
rs12319593	1.00[EUR][1000 genomes]
rs12581912	1.00[EUR][1000 genomes]
rs1586938	0.95[ASN][1000 genomes]
rs17013858	1.00[EUR][1000 genomes]
rs1986602	1.00[EUR][1000 genomes]
rs2405792	0.95[ASN][1000 genomes]
rs2405929	1.00[EUR][1000 genomes]
rs2897274	1.00[EUR][1000 genomes]
rs56170210	1.00[EUR][1000 genomes]
rs57328168	0.98[ASN][1000 genomes]
rs57977247	1.00[EUR][1000 genomes]
rs59690693	1.00[EUR][1000 genomes]
rs60587165	0.97[ASN][1000 genomes]
rs60902071	1.00[EUR][1000 genomes]
rs61359740	1.00[EUR][1000 genomes]
rs61571841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7138352	1.00[EUR][1000 genomes]
rs7138786	1.00[EUR][1000 genomes]
rs73379423	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73385292	1.00[EUR][1000 genomes]
rs73385293	1.00[EUR][1000 genomes]
rs7953491	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv470311	chr12:86484366-86550783	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2753278	chr12:86522507-86555154	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86523400-86528200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:86526200-86528200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr12:86526200-86531200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:86526800-86529800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:86527000-86528400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:86527000-86528800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr12:86527200-86528200	Weak transcription	Brain Germinal Matrix	brain
8	chr12:86527400-86529800	Weak transcription	Fetal Heart	heart
9	chr12:86527600-86528000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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