Variant report

Variant	rs58058345
Chromosome Location	chr11:72095526-72095527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72091482..72095787-chr11:72096179..72098134,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1160142	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12295464	0.93[EUR][1000 genomes]
rs17160018	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17162130	0.89[ASN][1000 genomes]
rs17162135	0.80[ASN][1000 genomes]
rs17162141	0.89[ASN][1000 genomes]
rs17162150	1.00[EUR][1000 genomes]
rs1864322	0.95[EUR][1000 genomes]
rs2886351	0.89[ASN][1000 genomes]
rs4268536	0.89[ASN][1000 genomes]
rs4475949	0.89[ASN][1000 genomes]
rs4488227	0.89[ASN][1000 genomes]
rs57380316	1.00[EUR][1000 genomes]
rs57402767	0.95[EUR][1000 genomes]
rs58515298	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58571741	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107422	0.95[EUR][1000 genomes]
rs7109307	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109466	0.97[EUR][1000 genomes]
rs7111173	0.85[EUR][1000 genomes]
rs7118089	0.95[EUR][1000 genomes]
rs7118697	0.95[EUR][1000 genomes]
rs7120137	0.95[EUR][1000 genomes]
rs7129526	0.95[EUR][1000 genomes]
rs73528860	0.87[ASN][1000 genomes]
rs7927430	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938979	0.87[EUR][1000 genomes]
rs7939212	0.85[EUR][1000 genomes]
rs7940087	0.87[EUR][1000 genomes]
rs7947482	1.00[EUR][1000 genomes]
rs7950298	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
2	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72069800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:72072800-72098800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:72073400-72103200	Weak transcription	K562	blood
6	chr11:72075000-72099400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72084200-72096200	Weak transcription	Small Intestine	intestine
8	chr11:72088400-72095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:72090200-72098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:72090200-72103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:72090400-72098800	Weak transcription	NHLF	lung
12	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:72090600-72096400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:72090600-72098800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:72090800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:72090800-72105400	Weak transcription	Left Ventricle	heart
17	chr11:72091400-72098600	Weak transcription	NHEK	skin
18	chr11:72091400-72106600	Weak transcription	Aorta	Aorta
19	chr11:72091400-72106600	Weak transcription	Ovary	ovary
20	chr11:72091400-72109600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
23	chr11:72092800-72098800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:72093600-72098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:72093600-72099000	Weak transcription	Lung	lung
26	chr11:72093800-72098800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:72093800-72109400	Weak transcription	Pancreas	Pancrea
28	chr11:72094600-72096000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr11:72094600-72096800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:72094800-72096800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:72095200-72097200	Weak transcription	Liver	Liver
32	chr11:72095200-72098400	Weak transcription	GM12878-XiMat	blood
33	chr11:72095200-72098800	Weak transcription	Esophagus	oesophagus
34	chr11:72095200-72098800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:72095200-72102600	Weak transcription	HepG2	liver
36	chr11:72095200-72103000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:72095200-72103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
39	chr11:72095400-72095600	Weak transcription	Dnd41	blood
40	chr11:72095400-72098800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links