Variant report

Variant	rs58060889
Chromosome Location	chr1:210585110-210585111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210580604..210582108-chr1:210584910..210587345,2	MCF-7	breast:
2	chr1:210583255..210586128-chr1:210592478..210594714,2	MCF-7	breast:
3	chr1:210546209..210547906-chr1:210583781..210585817,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489384	1.00[AMR][1000 genomes]
rs10489389	1.00[EUR][1000 genomes]
rs12088457	1.00[EUR][1000 genomes]
rs12088691	1.00[EUR][1000 genomes]
rs1342134	1.00[EUR][1000 genomes]
rs17015995	1.00[EUR][1000 genomes]
rs17015999	1.00[EUR][1000 genomes]
rs17016011	1.00[EUR][1000 genomes]
rs17276856	1.00[EUR][1000 genomes]
rs41354049	1.00[AMR][1000 genomes]
rs55684632	1.00[EUR][1000 genomes]
rs55749920	1.00[EUR][1000 genomes]
rs55934820	1.00[EUR][1000 genomes]
rs56136649	1.00[EUR][1000 genomes]
rs57296511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57841462	1.00[EUR][1000 genomes]
rs61384712	1.00[EUR][1000 genomes]
rs73071940	1.00[EUR][1000 genomes]
rs73071956	1.00[EUR][1000 genomes]
rs73071958	1.00[EUR][1000 genomes]
rs73071959	1.00[EUR][1000 genomes]
rs73071965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74156110	1.00[EUR][1000 genomes]
rs74156112	1.00[EUR][1000 genomes]
rs74156113	1.00[EUR][1000 genomes]
rs74156114	1.00[EUR][1000 genomes]
rs74156116	1.00[EUR][1000 genomes]
rs74156118	1.00[EUR][1000 genomes]
rs74156121	1.00[EUR][1000 genomes]
rs74156122	1.00[EUR][1000 genomes]
rs74156123	1.00[EUR][1000 genomes]
rs74156149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158918	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210566800-210586200	Weak transcription	Lung	lung
4	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
5	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
6	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
7	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:210571400-210591400	Weak transcription	Ovary	ovary
9	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
11	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
13	chr1:210574000-210586600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:210574400-210587400	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:210574400-210592200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
18	chr1:210577400-210591600	Weak transcription	Thymus	Thymus
19	chr1:210581200-210585400	Weak transcription	HSMM	muscle
20	chr1:210581200-210586600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:210581200-210590000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:210581200-210592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:210583400-210592400	Weak transcription	Liver	Liver
24	chr1:210584400-210585200	Strong transcription	Fetal Stomach	stomach
25	chr1:210584400-210587800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:210584400-210591600	Weak transcription	Esophagus	oesophagus
27	chr1:210584600-210585200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:210584600-210587200	ZNF genes & repeats	HSMMtube	muscle
29	chr1:210584800-210585200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:210584800-210585800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:210584800-210585800	Weak transcription	Fetal Heart	heart
32	chr1:210585000-210586000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:210585000-210586800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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