Variant report

Variant	rs58065412
Chromosome Location	chr11:57142778-57142779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17151863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151872	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3885017	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3885018	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55820514	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59832434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57138800-57144200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:57139000-57143200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:57139200-57143000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:57140200-57142800	Weak transcription	Right Ventricle	heart
5	chr11:57140800-57142800	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:57142600-57142800	Enhancers	Fetal Brain Male	brain
7	chr11:57142600-57143000	Enhancers	Fetal Brain Female	brain
8	chr11:57142600-57143600	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links