The 2.0 version of rSNPBase

Variant report

Variant rs58078405
Chromosome Location chr4:143481508-143481509
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:143471200-143481800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr4:143471400-143481800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr4:143472600-143486800 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr4:143475600-143488000 Weak transcription Primary hematopoietic stem cells blood
5 chr4:143477800-143484400 Weak transcription HMEC breast
6 chr4:143477800-143487000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr4:143478000-143486600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr4:143478000-143486800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr4:143478200-143486000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr4:143478400-143482000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
11 chr4:143478800-143482200 Enhancers Primary T helper naive cells fromperipheralblood blood
12 chr4:143478800-143483600 Weak transcription Fetal Thymus thymus
13 chr4:143478800-143488000 Weak transcription Fetal Intestine Large intestine
14 chr4:143479200-143487600 Weak transcription Fetal Intestine Small intestine
15 chr4:143479200-143488400 Weak transcription Pancreas Pancrea
16 chr4:143479800-143482000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr4:143480000-143482200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr4:143480200-143481600 Enhancers Fetal Lung lung
19 chr4:143480200-143485000 Weak transcription HSMM muscle
20 chr4:143480200-143487000 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr4:143480400-143482000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr4:143480400-143483400 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr4:143480400-143484800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr4:143480600-143482000 Enhancers Fetal Heart heart
25 chr4:143480600-143482200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
26 chr4:143480600-143487800 Weak transcription Placenta Amnion Placenta Amnion
27 chr4:143481000-143482000 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr4:143481200-143481600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
29 chr4:143481200-143481800 Enhancers Primary T cells fromperipheralblood blood
30 chr4:143481200-143482000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr4:143481200-143482000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr4:143481200-143482000 Enhancers Primary T helper naive cells from peripheral blood blood
33 chr4:143481200-143482000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
34 chr4:143481200-143486000 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr4:143481400-143481600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr4:143481400-143481600 Enhancers Osteobl bone
37 chr4:143481400-143481800 Weak transcription NHLF lung
38 chr4:143481400-143482600 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr4:143481400-143482800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr4:143481400-143486000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr4:143481400-143488400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015