Variant report

Variant	rs58080416
Chromosome Location	chr8:62788324-62788325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr8:62788017-62788434	K562	blood:	n/a	n/a
2	CBX3	chr8:62787935-62788457	HCT-116	colon:	n/a	n/a
3	EP300	chr8:62788141-62788485	K562	blood:	n/a	chr8:62788348-62788362
4	JUND	chr8:62788020-62788453	HCT-116	colon:	n/a	n/a
5	ARID3A	chr8:62788055-62788394	K562	blood:	n/a	n/a
6	FOSL1	chr8:62787916-62788414	HCT-116	colon:	n/a	n/a
7	NR2F2	chr8:62787947-62788326	K562	blood:	n/a	n/a
8	CEBPB	chr8:62788105-62788342	K562	blood:	n/a	n/a
9	TEAD4	chr8:62787994-62788421	K562	blood:	n/a	n/a
10	EP300	chr8:62788025-62788392	K562	blood:	n/a	chr8:62788348-62788362
11	CUX1	chr8:62788129-62788463	K562	blood:	n/a	n/a
12	JUN	chr8:62787986-62788384	K562	blood:	n/a	n/a
13	MAFK	chr8:62788089-62788345	K562	blood:	n/a	n/a
14	TBL1XR1	chr8:62788104-62788326	K562	blood:	n/a	n/a
15	TAL1	chr8:62788026-62788421	K562	blood:	n/a	n/a
16	JUND	chr8:62788036-62788396	HCT-116	colon:	n/a	n/a
17	JUND	chr8:62787986-62788395	K562	blood:	n/a	n/a
18	SP1	chr8:62787949-62788376	HCT-116	colon:	n/a	n/a
19	FOSL1	chr8:62787864-62788485	HCT-116	colon:	n/a	n/a
20	JUN	chr8:62788015-62788368	K562	blood:	n/a	n/a
21	FOSL1	chr8:62788006-62788376	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:62678761..62681544-chr8:62788290..62791264,2	K562	blood:
2	chr8:62680044..62682717-chr8:62786976..62789790,2	K562	blood:
3	chr8:62781573..62783288-chr8:62786712..62789501,2	K562	blood:
4	chr8:62620565..62623407-chr8:62786770..62788455,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254119	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10088053	1.00[ASN][1000 genomes]
rs16928033	1.00[ASN][1000 genomes]
rs16928035	1.00[ASN][1000 genomes]
rs28377818	0.80[EUR][1000 genomes]
rs28379606	0.80[EUR][1000 genomes]
rs28400370	0.80[EUR][1000 genomes]
rs28558888	0.80[EUR][1000 genomes]
rs28793274	1.00[ASN][1000 genomes]
rs344281	0.80[EUR][1000 genomes]
rs344307	0.82[EUR][1000 genomes]
rs344310	0.80[EUR][1000 genomes]
rs56016636	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56125512	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56235963	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56741469	0.81[EUR][1000 genomes]
rs56830160	0.85[AFR][1000 genomes]
rs57344387	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58710029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58960042	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59120662	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60520860	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61568322	0.81[EUR][1000 genomes]
rs62507583	0.85[AFR][1000 genomes]
rs62507585	0.85[AFR][1000 genomes]
rs6471975	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66667350	1.00[ASN][1000 genomes]
rs67870277	1.00[ASN][1000 genomes]
rs6991008	1.00[ASN][1000 genomes]
rs7008718	1.00[ASN][1000 genomes]
rs7012432	1.00[ASN][1000 genomes]
rs7012678	1.00[ASN][1000 genomes]
rs73255128	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255147	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255189	0.80[EUR][1000 genomes]
rs73682603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682605	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73685132	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73685137	0.81[EUR][1000 genomes]
rs73685139	0.81[EUR][1000 genomes]
rs73685145	0.81[EUR][1000 genomes]
rs73685148	0.81[EUR][1000 genomes]
rs73685149	0.81[EUR][1000 genomes]
rs73685158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73685159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820373	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv611427	chr8:62733267-62848952	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62783200-62789200	Weak transcription	Fetal Brain Male	brain
2	chr8:62787600-62791600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links