Variant report

Variant	rs580994
Chromosome Location	chr1:86492112-86492113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1027819	1.00[EUR][1000 genomes]
rs10493784	1.00[EUR][1000 genomes]
rs11806099	1.00[EUR][1000 genomes]
rs1507291	1.00[EUR][1000 genomes]
rs1537827	1.00[EUR][1000 genomes]
rs17128439	1.00[EUR][1000 genomes]
rs17128868	1.00[EUR][1000 genomes]
rs41416248	1.00[EUR][1000 genomes]
rs4269793	1.00[EUR][1000 genomes]
rs476831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs483191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs555277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs569761	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57475826	1.00[EUR][1000 genomes]
rs581018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs582163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs586685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59856126	1.00[EUR][1000 genomes]
rs60535581	1.00[EUR][1000 genomes]
rs615325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs624321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs628440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs639814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666498	1.00[EUR][1000 genomes]
rs685130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74097671	1.00[EUR][1000 genomes]
rs74097690	1.00[EUR][1000 genomes]
rs74097691	1.00[EUR][1000 genomes]
rs74097692	1.00[EUR][1000 genomes]
rs74097697	1.00[EUR][1000 genomes]
rs74100814	1.00[EUR][1000 genomes]
rs7516144	1.00[EUR][1000 genomes]
rs7546715	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv462406	chr1:86412177-86509996	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546757	chr1:86412177-86509996	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010312	chr1:86469730-86686426	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv525678	chr1:86487914-86549498	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86488200-86493000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links