Variant report

Variant	rs58102262
Chromosome Location	chr1:215716303-215716304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10127809	0.85[ASN][1000 genomes]
rs11120588	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11120591	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12089271	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13376355	1.00[EUR][1000 genomes]
rs1557172	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024732	1.00[EUR][1000 genomes]
rs17024744	0.85[ASN][1000 genomes]
rs17024755	0.85[ASN][1000 genomes]
rs17024758	0.85[ASN][1000 genomes]
rs1819740	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876408	1.00[EUR][1000 genomes]
rs2677113	0.89[ASN][1000 genomes]
rs2797392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885989	0.85[ASN][1000 genomes]
rs35134381	0.85[ASN][1000 genomes]
rs3753837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767251	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767252	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767253	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3767256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767258	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767259	1.00[ASN][1000 genomes]
rs3767260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41304083	0.92[ASN][1000 genomes]
rs41308435	0.96[ASN][1000 genomes]
rs41315587	0.92[ASN][1000 genomes]
rs4607849	0.85[ASN][1000 genomes]
rs56783105	0.96[ASN][1000 genomes]
rs56956076	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56957283	0.96[ASN][1000 genomes]
rs57179404	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57309511	0.85[ASN][1000 genomes]
rs57311096	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57379455	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57397989	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57563355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57628126	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57758604	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57861859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57935471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58162887	0.96[ASN][1000 genomes]
rs58163611	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58257972	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58330534	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58342290	1.00[EUR][1000 genomes]
rs58425452	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58542168	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58557470	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58594611	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58597977	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58629829	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58649725	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58682085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58759277	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58836680	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58867901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58919310	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59015398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59026507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59040705	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59192192	0.89[ASN][1000 genomes]
rs59233975	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59319848	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59577074	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59628625	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59635576	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59636344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60026262	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60365921	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60404320	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60533889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60590154	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60620576	0.85[ASN][1000 genomes]
rs61059263	1.00[EUR][1000 genomes]
rs61368758	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61502956	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61522423	0.92[ASN][1000 genomes]
rs61600848	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61618553	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61633090	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61685588	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6540901	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6689680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700397	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081443	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081447	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081459	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081470	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081479	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081487	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73081497	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083403	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73083410	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083415	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083420	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083421	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083429	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083437	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083470	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73083500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085410	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73087440	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73087444	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087448	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73087450	0.96[ASN][1000 genomes]
rs73087454	0.96[ASN][1000 genomes]
rs73087457	0.96[ASN][1000 genomes]
rs73087461	0.92[ASN][1000 genomes]
rs73087467	0.92[ASN][1000 genomes]
rs73090172	1.00[EUR][1000 genomes]
rs73090177	1.00[EUR][1000 genomes]
rs73090179	1.00[EUR][1000 genomes]
rs73091959	1.00[EUR][1000 genomes]
rs73091984	0.85[ASN][1000 genomes]
rs73091986	0.85[ASN][1000 genomes]
rs73091998	0.85[ASN][1000 genomes]
rs73094106	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73094120	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73094142	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73100105	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100108	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100110	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100116	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100129	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100141	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7531580	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7545425	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3411228	chr1:215704606-215742745	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215712600-215716600	Enhancers	Rectal Smooth Muscle	rectum
2	chr1:215712600-215717000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:215713800-215716400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:215713800-215716400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:215714000-215716400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:215715000-215719600	Enhancers	Colon Smooth Muscle	Colon
7	chr1:215715200-215716600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:215715800-215717200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:215716000-215717400	Enhancers	Liver	Liver
10	chr1:215716200-215716400	Enhancers	Fetal Intestine Small	intestine
11	chr1:215716200-215716400	Enhancers	GM12878-XiMat	blood
12	chr1:215716200-215716400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:215716200-215716600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:215716200-215716800	Enhancers	Adipose Nuclei	Adipose
15	chr1:215716200-215717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:215716200-215717000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:215716200-215717000	Enhancers	Stomach Mucosa	stomach
18	chr1:215716200-215717000	Enhancers	HMEC	breast
19	chr1:215716200-215717000	Enhancers	Osteobl	bone
20	chr1:215716200-215717200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr1:215716200-215717200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:215716200-215717200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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